Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01167 ATGATGTTGAATTCTTGTGGAGAAGATGAATTGTATGAACAATTATGGAAGGCTTGTGCAGGTCCTCATGTTGAAGTTCCTCGTGCTGGACAAATGGTTTACTATTTTCCTCAAGGACACATGGAACAaTTAGAAGTATCAACAAATCAAGAACTAAATCAGAGGATTCCATTGTTCAAACTTCCCAACAAGATCCTTTGTCGTGTTGTCAATGTTCATTTACTGGCTGAACAAGAAACAGATGAGGTTTATGCACAGATAACTCTGGTTCCAGAATCTAATCAAACTGAGCCTACAAGCCTTGATCCTTGTCCTGCTGAACCTCCAAGACCGAAAACTCACTCCTTCTCCAAGGTCTTAACTAACTCTGATACAAGTACTCATGGTGGCTTTTCTGTTCTTAGGAAGCATGCTACAGAATGTCTTCCTTCATTGGATTTGTCTCAATCTACTCCAACTCAGGAATTGGTTGCTAGGGACCTTCACAATTACGAATGGCACTTTAAGCATATATTTAGAGGTCAACCACGTAGACACTTGCTCACAACTGGATGGAGTACTTTTGTGACTTCGAAGAGATTAGTCGCTGGAGATACATTTGTGTTTCTGAGAGGGGAAAATGGAGAATTACGCGTTGGAGTGAGGCATCTTGCTTCTCCACAGAGCTGCATGCCTTCATCTGTGATTTCTGGTCAGAGCATGCACCTTGGAGTCCTTGCAACTGCATCTCATGCTGTTGCAACTCAAACTCTTTTTGTAGTATACTATAAGCCCAGGATGAGCCAGTTCATTATTACTGTGAATAAATATATGGAAGCTATGAACCAAAAATATAGTGTTGGCATGAGGTTCAAGATGAGTTTTGATGGGGACGATTCCTCTGAGACTGACAAAAGATTTTCAGGCACAATAATTGGACAAGAGGATATTTCTTCACACTGGTTGAATTCAAAATGGAGATCACTCAAGGTTCAATGGGATGACCCTGCTTCTATTCCAAGACCTGATAGAATTTCACCATGGGAGATAGAACCCCTTATGGCTTCGGTTCCTACAACTCCTCAACCTGCTGCTGTAAAATATAAAAGGCCTAGACTACCTAGTGAAGTTCCAGATCTTGGTGACGCACTAGGTGACTCTACTTACTGGGAAGCTGGGTTGACACAATCAGACGTAACACAAGTTAATATTATGTCTGAAAACAAAAGGAGTGAAAATATGCATATGTGGCATCATAAGCAAACTGATAATAGCAGCTGCAATGGTATATCAAGGAATCCGACAGACGGGAGTTGGTTATCTTCTCCACATTCTAGTGGTCCTTCTCATTTGTGTCAGGAGACAACCGACGATAGCAAGAGTGTCAATGTCTCAGCTTGGAATATTTCAAAAACTCGCTCAGAAATATTGAACAACAATGATCATTTGATTGACAAAGTTGACAAGGAGGACAAAATAGAGGCTCCTACTAGCTGTAGATTGTTTGGGATTGATCTTAATGATCACAGCAGGAACACTCAGAAGGCATCTGAATATGCAGAAAATATATTTGTAGTCCCTTCTGAGGGATGTGTTGTTGCTCCCTTGTCAAGAACTGATGCAGACCAAAATAAGTTTGATATCTCAAAGTCTTCAAAAGAAAGGAAACAAGAACAGTTACAAATATCTCCAAATGAAACACAAAGCAAGCAAACCAATAGCAGAAGTTGCACTAAGGTTCAAATGCAGGGTGTTGCAGTGGGTCGTGCGGTGGACTTGACCGCATTGCATGGATATGGTGAACTTATCGATGAATTGGAGAAGCTGTTTGACATAAAGGGACAGATCAAACCTAGGAACAAGTGGGAAATTGTCTTTACCGATGATGAAGGGGATATGATGCTTGTTGGTGATGATCCATGGCCGGAATTTTGCAATATGGTGAAAAGAATCTTCATTTGTTCAAGCCAAGATGTACACAAAATGAGCACAGGAACCAAATTACCTATCTCATCAATAGAAGAGACTGTAATAAGCTCAGACACAGCTGAGACATGA 2037 0.408 MMLNSCGEDELYEQLWKACAGPHVEVPRAGQMVYYFPQGHMEQLEVSTNQELNQRIPLFKLPNKILCRVVNVHLLAEQETDEVYAQITLVPESNQTEPTSLDPCPAEPPRPKTHSFSKVLTNSDTSTHGGFSVLRKHATECLPSLDLSQSTPTQELVARDLHNYEWHFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGENGELRVGVRHLASPQSCMPSSVISGQSMHLGVLATASHAVATQTLFVVYYKPRMSQFIITVNKYMEAMNQKYSVGMRFKMSFDGDDSSETDKRFSGTIIGQEDISSHWLNSKWRSLKVQWDDPASIPRPDRISPWEIEPLMASVPTTPQPAAVKYKRPRLPSEVPDLGDALGDSTYWEAGLTQSDVTQVNIMSENKRSENMHMWHHKQTDNSSCNGISRNPTDGSWLSSPHSSGPSHLCQETTDDSKSVNVSAWNISKTRSEILNNNDHLIDKVDKEDKIEAPTSCRLFGIDLNDHSRNTQKASEYAENIFVVPSEGCVVAPLSRTDADQNKFDISKSSKERKQEQLQISPNETQSKQTNSRSCTKVQMQGVAVGRAVDLTALHGYGELIDELEKLFDIKGQIKPRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVKRIFICSSQDVHKMSTGTKLPISSIEETVISSDTAET 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01167 678 MobiDBLite consensus disorder prediction 94 121 - -
Tsu04g01167 678 MobiDBLite consensus disorder prediction 536 553 - -
Tsu04g01167 678 Pfam AUX/IAA family 546 653 IPR033389 -
Tsu04g01167 678 ProSiteProfiles B3 DNA-binding domain profile. 116 218 IPR003340 GO:0003677
Tsu04g01167 678 Gene3D - 113 217 IPR015300 -
Tsu04g01167 678 PANTHER AUXIN RESPONSE FACTOR 1 668 - -
Tsu04g01167 678 Gene3D - 563 656 - -
Tsu04g01167 678 MobiDBLite consensus disorder prediction 554 569 - -
Tsu04g01167 678 Pfam B3 DNA binding domain 116 215 IPR003340 GO:0003677
Tsu04g01167 678 Gene3D - 277 350 - -
Tsu04g01167 678 MobiDBLite consensus disorder prediction 413 451 - -
Tsu04g01167 678 MobiDBLite consensus disorder prediction 536 569 - -
Tsu04g01167 678 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 668 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tsu04g01167 678 SMART B3_2 116 218 IPR003340 GO:0003677
Tsu04g01167 678 SUPERFAMILY DNA-binding pseudobarrel domain 103 245 IPR015300 -
Tsu04g01167 678 ProSiteProfiles PB1 domain profile. 568 649 IPR000270 GO:0005515
Tsu04g01167 678 SUPERFAMILY CAD & PB1 domains 566 644 - -
Tsu04g01167 678 CDD B3_DNA 114 215 IPR003340 GO:0003677
Tsu04g01167 678 Pfam Auxin response factor 242 323 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01167 Tsu-Chr4 11596130 11601738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01167 2 661 B3 DNA Binding Superfamily AT4G23980 57.589 0.0 690
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tsu04g01167 B3 6.2e-20 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01167 04 11596130 11601738 Tsu06g00564 06 4866189 4870490 PCT