Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01164 ATGAAGCTTGATGACGATCTTGGTCCTGACCGTGAGGATCATTTTCAAACGGATGATGAAGAAAATCAAGCAGATAGATattttgataatgatgatgatgatagtgatTCAGATAAAAATTCTCCTCATTCTAATGAGGTTGATTTTAATACCACATGGCCTCAAACCTatagGACATCTATGGACATGTTATCAAGTGTAAGTTTGACACCAACTGGAATTAGTTTCCTAAAGAGAATTGGTTCAACAGGAAAGGGTAGTTTTATCTCTAAGGAAAATCAAGATGATTTTTCCAATTCTTTGACAATACCTCTTATTTCTGAGGAAGAACCTTCAATCAAACAAGAGTTGTCAACTTCAACATCTCCTCTTCAATCACTTGTCAGCAGTGCAAAAATCTCTGCCACTGAAATTCCACAACAACAGAGACAATGTTCCTTTGTTCAATCAGTAATTAATGGGACCAATATATTATGTGGGATAGGACTTATGACCATTCCATATGCAGTAAAAGAAGGAGGGTTGTTGAGTCTTTCATTACTGTTAATGTTTGCTCTTATTTGTTGTTATACTGGAATTTTATTGAAGAGATGTTTGGAAAGCTATCCTGGAATCAGCAGTTATCCAGATATTGGCCAGGCTGCTTTCGGAATCGTTGGTCGCTTGGGGATTGCGGTGAGTACAATAAGGCTTACAggcatgGCTTCTTCTGTTGAGTTTTTAATACTTGTAAGTGATAACCTCTCATCACTTTTCCCCAACACCAGCATGACGCTAGCCGGTACAGAACTTGGTTCACATCAAGTTTTTACCATCACTGCAGCAATTATAGTTTTACCAACAGTTTGGTTGAAAAATCTAAGCCTACTTTCATATATTTCAGTTGGAGGAATATTTGCAACAATACTTGTAGCACTTTGCTTGTTCTGGGTTGGTGCAATAGACCACGTTGGATATAttaatcaagaatataaattcCTAGACATCGAAAACATATCCGTATCAATTGGTCTctttggttttggatttgctGGCCATGCTGTTTTTCCAAATATCTATTCATCTATGAAGGATCCATCCAAATTTCCATTAGTTCTATATATCAGTTTCGCTTTCTGTCTTGTAATGTACGTCAGTGTAGGAATAGTTGGCTATATAATGTTTGGCGAAAAAATTAAATCTCAGTTTACTTTAAACATGCCAAAAGAGTTATATGCATCCAAGATAGCAATTTGGACAACtgtTGTGACTCCTCTTGCAAAATATGCTTTAACATTATTGCCTATTGCATCAAGCATAGAGGAACTTGTCCCTTCTAGGCTAAGATGTTATGCTATGTCTATTGTTATCAGAACAATTTTGGTGATTTCATGTTTAGTTGTGGCTCTCTCTTTTCCATATTTTGGTTCTGTGATGGCACTAATTGGTTCTATGATGTCCATGCTAGTTGCACTTATTTATCCTTCTGCATGTTATCTCAAGCTACAGAGTGGGAGATTATCAAATATGCAGatAATAAATTGCATTTTGGTTATTATTGTGGGGGTGATATGCGCTATGATAGGAACATACTCAGCTACTACAAGAATATCTAGTGGTGGAGACTAA 1608 0.3501 MKLDDDLGPDREDHFQTDDEENQADRYFDNDDDDSDSDKNSPHSNEVDFNTTWPQTYRTSMDMLSSVSLTPTGISFLKRIGSTGKGSFISKENQDDFSNSLTIPLISEEEPSIKQELSTSTSPLQSLVSSAKISATEIPQQQRQCSFVQSVINGTNILCGIGLMTIPYAVKEGGLLSLSLLLMFALICCYTGILLKRCLESYPGISSYPDIGQAAFGIVGRLGIAVSTIRLTGMASSVEFLILVSDNLSSLFPNTSMTLAGTELGSHQVFTITAAIIVLPTVWLKNLSLLSYISVGGIFATILVALCLFWVGAIDHVGYINQEYKFLDIENISVSIGLFGFGFAGHAVFPNIYSSMKDPSKFPLVLYISFAFCLVMYVSVGIVGYIMFGEKIKSQFTLNMPKELYASKIAIWTTVVTPLAKYALTLLPIASSIEELVPSRLRCYAMSIVIRTILVISCLVVALSFPYFGSVMALIGSMMSMLVALIYPSACYLKLQSGRLSNMQIINCILVIIVGVICAMIGTYSATTRISSGGD 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01164 535 Pfam Transmembrane amino acid transporter protein 144 525 IPR013057 -
Tsu04g01164 535 PANTHER AMINO ACID TRANSPORTER AVT1D 34 530 - -
Tsu04g01164 535 MobiDBLite consensus disorder prediction 1 52 - -
Tsu04g01164 535 MobiDBLite consensus disorder prediction 1 23 - -
Tsu04g01164 535 PANTHER OS05G0424000 PROTEIN-RELATED 34 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01164 Tsu-Chr4 11551826 11556970 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01164 1 532 Amino Acid or Auxin Permease AAAP Family AT5G02180 50.090 0.0 529
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01164 K15015 - qsu:112025453 557.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01164 04 11551826 11556970 Tsu04g01164 04 11551826 11556970 ECH