Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01163 atgctaactttaccACTCAAATCACAAGTTATTCCATCTGGGTATCTTCCAAGACCACCAAACAAGCTTCGTTTTCATCACAATGTAAGTCTCACAGTTTCAATTACTGTTGGCACCCCCCCACAAAATGTGTCATTAGTAATTGATACAGGAAGTGAGCTTTCATGGCTTCATTGTAACAACAGAACAAACCGGGTTTCAGCCAACCCATTTTTTAACCcgaatttttcttcttcctatAAACCAGTTCCTTGTTCTTCAAGTACTTGCACGACCCGAACCCGAGATTTTCCCATACCTGCTTCATGTGACTCCAACAATCTCTGCCATGCTACTCTCTCATATGCAGATTTTTCTTCCTCTGAAGGGAACCTTGCTTTTGATACATTCGGGTTTGGAGGATCCGATAACCCAGGTATTGTATTCGGGTGTATGGAATCGAGCATTAGCACAAACTCTGATGGAGATTCCAACTCAACCGGGTTAATGGGTATGAATCTCGGGTCACTTTCGTTTGTTTCTCAGCTCAAGATACCTAAATTCTCCTATTGTATATCTGGTTCGGATTTCTCAGGTATTTTACTTCTCGGGGAATCCAATTTCTCGTGGACTGGGTCGTTGAACTATACTCCATTAGTTCAAATATCCACTCCTTTACCTTATTTTGATCGGGCTGCATATACGGTTCGACTCATGGGAATTATGGTTTCGAATAAATTACTTAATTTGTCAGAAGGTGTACTTGTTCCAGATCATACTGGAGCGGGCCAAGCTATGTTTGATTTGGGTACTCAGTTTACATTTTTACTTGGGCCTGTTTATAATGTGTTGAGAGAAGAGTTTCTTAATCAAACAAATAGTACATTACGAGTATTGGACGATCCAAATTTTGCATTTGAAGTAGGAATGGATCTTTGTTTTCGGCTTCCATTGAACCAATCAAAATTACCCGAAGTTCCGAGTGTTAGTTTAGTTTTCGATGGAGCCGAGATGAGGGTTTCGGGCGAACAACTTTTATATCGGGTACCGGGTCGAGTCATAGGGAATGATTCGGTGTATTGCTTCACATTTGGGAACTCAGATCTCCTAGGTGTAGAGTCATTCATCATTGgacatcatcaacaacaaaatatgTGGATGGAATTTGATCTTGTGAAATCTAGGATTGGATTAGCTCATGTACGTTGTGATTTGGTGAGCCAGAAAGTGTTGGGCTTGGGGTAG 1224 0.3946 MLTLPLKSQVIPSGYLPRPPNKLRFHHNVSLTVSITVGTPPQNVSLVIDTGSELSWLHCNNRTNRVSANPFFNPNFSSSYKPVPCSSSTCTTRTRDFPIPASCDSNNLCHATLSYADFSSSEGNLAFDTFGFGGSDNPGIVFGCMESSISTNSDGDSNSTGLMGMNLGSLSFVSQLKIPKFSYCISGSDFSGILLLGESNFSWTGSLNYTPLVQISTPLPYFDRAAYTVRLMGIMVSNKLLNLSEGVLVPDHTGAGQAMFDLGTQFTFLLGPVYNVLREEFLNQTNSTLRVLDDPNFAFEVGMDLCFRLPLNQSKLPEVPSVSLVFDGAEMRVSGEQLLYRVPGRVIGNDSVYCFTFGNSDLLGVESFIIGHHQQQNMWMEFDLVKSRIGLAHVRCDLVSQKVLGLG 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01163 407 CDD pepsin_A_like_plant 32 396 IPR034161 -
Tsu04g01163 407 PANTHER ASPARTYL PROTEASE-RELATED 2 403 IPR001461 GO:0004190|GO:0006508
Tsu04g01163 407 PANTHER ASPARTIC PROTEINASE PCS1 2 403 - -
Tsu04g01163 407 Pfam Xylanase inhibitor N-terminal 33 197 IPR032861 -
Tsu04g01163 407 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 46 57 IPR001969 GO:0004190|GO:0006508
Tsu04g01163 407 SUPERFAMILY Acid proteases 32 397 IPR021109 -
Tsu04g01163 407 Gene3D Acid Proteases 199 400 IPR021109 -
Tsu04g01163 407 Pfam Xylanase inhibitor C-terminal 226 391 IPR032799 -
Tsu04g01163 407 Gene3D Acid Proteases 24 198 IPR021109 -
Tsu04g01163 407 ProSiteProfiles Peptidase family A1 domain profile. 31 392 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01163 Tsu-Chr4 11545243 11546549 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01163 33 397 Miscellaneous Gene Families AT1G77480 23.590 2.76e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01163 - - gmx:100813686 691.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01163 04 11545243 11546549 Tsu04g01163 04 11545243 11546549 ECH
Tsu04g01163 04 11545243 11546549 Tsu02g05215 02 61088729 61091076 ECH
Tsu04g01163 04 11545243 11546549 Tsu02g02121 02 20832141 20834284 ECH