Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01155 ATGATTGAGTCATCTATGTCAAAGACAATGATAGAGAAAATAATGACTTCTAATTGGTCAGAAGGGTCAGAACATCATCAACTTTTAAGAGACATTTTAGTTGATGAGTCTTCTCTACTTATGTTGCCACAAGAGACAGTAAATGAAGTAACCAATACAAGTCATGATGATTTTTCAAAAGATCAAGTCTTTAATAGgtttatttcaaatatttattcaGATCCTACCATTTCAGATATTGAAAATGCTTTGTTAGTTACTAACCATACTAACCACTTTCAACAAATTTCATCAACAAGAGTTTCGATATTGGAAAGGAGTTTGAGTAAGATTGAGAATAAGTATACATTGAAAATCAAATGCTATGGCAATGGGATGGGTGATGATGGATATAGGTGGAGGAAGTATGGTcaaaaatccattaaaaataGCCCAAATCCTAGGAGTTACTATAGGTGCACCAAACCAAAGTGTGGTGCTAAGAAGCAAATTGAGAGATCCATTGAAGACTCTGATACTCTTATAATCACTTATGAAAGACTCCACTTGCACTTCACTTATCCGTATTTCTTAGTGGGCCAATCACATCAATCAATCAAGAAGTCCAAGCCCACTTCTTCACAAGGCCCAACCCAAGTTCATAAAGCAAATGATGTTCATGAAGGCCAAATTATACAAGAAGTCACTGAAGCTCAAACTAGTGCTTCTTTGGGACTCATACCACCCAATTTATCGGACTCTACACAAGATAAGGTCCAAGAAAATTTGGCCTCACAAGGATTGCTTGAAGACATGGTGCCACTCATGGTTAGGAACCCCATGAACAATGTTGATACTTGA 840 0.356 MIESSMSKTMIEKIMTSNWSEGSEHHQLLRDILVDESSLLMLPQETVNEVTNTSHDDFSKDQVFNRFISNIYSDPTISDIENALLVTNHTNHFQQISSTRVSILERSLSKIENKYTLKIKCYGNGMGDDGYRWRKYGQKSIKNSPNPRSYYRCTKPKCGAKKQIERSIEDSDTLIITYERLHLHFTYPYFLVGQSHQSIKKSKPTSSQGPTQVHKANDVHEGQIIQEVTEAQTSASLGLIPPNLSDSTQDKVQENLASQGLLEDMVPLMVRNPMNNVDT 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01155 279 ProSiteProfiles WRKY domain profile. 122 184 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu04g01155 279 Gene3D WRKY domain 122 179 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu04g01155 279 SUPERFAMILY WRKY DNA-binding domain 125 184 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu04g01155 279 PANTHER WRKY TRANSCRIPTION FACTOR 49-RELATED 18 276 - -
Tsu04g01155 279 Pfam WRKY DNA -binding domain 128 184 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu04g01155 279 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 18 276 IPR044810 GO:0003700
Tsu04g01155 279 SMART WRKY_cls 127 186 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01155 Tsu-Chr4 11450262 11453152 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01155 29 272 WRKY Transcription Factor Family AT5G43290 43.726 2.34e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tsu04g01155 WRKY 8.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01155 - - gmx:100810459 365.155