Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01147 aTGGCTGGGATTCTTCTCCTCACCATTGCATCATTAGCCTCTCTTTTTGCTGCAACCACTGCTCGAATCCCTGGTGTTTATAATGGTGGTCCTTGGCAAAGTGCTCATGCTACTTTCTATGGTGGCAGTGATGCCTCAGGAACAATgggcgGTGCTTGTGGATATGGAAACTTATACAGTCAAGGTTATGGAGTAAACACAGCAGCACTAAGTACAGCACTATTCAACAATGGCTTAAGTTGTGGTGCATGTTTTGAGCTTAAATGTGACCAAGATCCACGTTGGTGTAACCCAGGAAACCCATCAATCTTAATAACTGCTACAAACTTTTGTCCTCCAAATTTTGCTGAACCTAGTGACAATGGTGGTTGGTGTAATCCACCTAGAGAACATTTTGATCTTGCTATGCCTATGTTTCTTAAGATTGCTCAATACCGTGCCGGAATCGTCCCCGTCGCTTACCGCCGGGTACCATGCAGAAAGACAGGAGGCATCAGATTCACAATCAACGGTTTCCGTTACTTCAACTTGGTTTTAGTCACCAACGTCGCGGGTGCAGGGGATATCGTGCGCGTGAGTGTTAAAGGAACCAAAACTGCATGGATGCCAATGAGCCGTAACTGGGGGCAAAATTGGCAATCTAATGCAGTTTTTGTGGGTCAGGCTCTATCTTTTAGGGTTACCGGCAGTGACCGACGTACATCAACGTCAATGAATGTGGCACCACCTAATTGGCAGTTTGGACAAACCTTCACTGGGAAGAATTTCCGTGTctga 777 0.4517 MAGILLLTIASLASLFAATTARIPGVYNGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCDQDPRWCNPGNPSILITATNFCPPNFAEPSDNGGWCNPPREHFDLAMPMFLKIAQYRAGIVPVAYRRVPCRKTGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGTKTAWMPMSRNWGQNWQSNAVFVGQALSFRVTGSDRRTSTSMNVAPPNWQFGQTFTGKNFRV 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01147 258 SUPERFAMILY Barwin-like endoglucanases 31 182 IPR036908 -
Tsu04g01147 258 PANTHER EXPANSIN-A15 4 257 IPR002963 GO:0009664
Tsu04g01147 258 Pfam Lytic transglycolase 67 154 IPR009009 -
Tsu04g01147 258 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Tsu04g01147 258 SMART dpbb_1 67 154 IPR007112 -
Tsu04g01147 258 SUPERFAMILY PHL pollen allergen 161 253 IPR036749 -
Tsu04g01147 258 Gene3D - 164 256 IPR036749 -
Tsu04g01147 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 164 IPR007112 -
Tsu04g01147 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
Tsu04g01147 258 Gene3D - 18 160 IPR036908 -
Tsu04g01147 258 PANTHER EXPANSIN 4 257 - -
Tsu04g01147 258 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Tsu04g01147 258 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Tsu04g01147 258 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Tsu04g01147 258 PRINTS Expansin signature 122 139 IPR002963 GO:0009664
Tsu04g01147 258 PRINTS Expansin signature 139 152 IPR002963 GO:0009664
Tsu04g01147 258 PRINTS Expansin signature 163 175 IPR002963 GO:0009664
Tsu04g01147 258 PRINTS Expansin signature 175 196 IPR002963 GO:0009664
Tsu04g01147 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Tsu04g01147 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Tsu04g01147 258 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Tsu04g01147 258 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Tsu04g01147 258 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Tsu04g01147 258 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Tsu04g01147 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Tsu04g01147 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01147 Tsu-Chr4 11370746 11374127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01147 4 258 Expansin Gene Family AT2G39700 82.745 1.37e-161 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01147 - - gmx:547955 504.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01147 04 11370746 11374127 Tsu05g03216 05 43352150 43354364 ECH
Tsu04g01147 04 11370746 11374127 Tsu04g01147 04 11370746 11374127 ECH
Tsu04g01147 04 11370746 11374127 Tsu02g05201 02 60988116 60990198 ECH
Tsu04g01147 04 11370746 11374127 Tsu02g02100 02 20600452 20603806 ECH