Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01141 ATGTCGGATATGCACTTGGAAATGAAGGATAGGCAGCGGTGGAGAGCGGAAGAGGATGCATTATTACGTGCTTATGTCAAACAGTATGGTCCTAGGGAATGGAACCTTGTGTCTCAGCGCATGAACACGCCTCTTAATAGGGACGCAAAATCGTGCTTAGAAAGGTGGAAGAATTATCTCAAGCCTGGTATTAAGAAAGGATCTCTCACTGAGGAAGAACAACGCCTTGTCATTAGCCTTCAAGCGACACACGGAAACAAATGGAAGAAAATCGCCGCGCAAGTCCCTGGTCGCACTGCTAAGAGATTAGGGAAGTGGTGGGAAGTTTTCAAAGAGAAGCAACAGAGAGAAACAAAAGGTAGTATTAACAGAACCGTCGACCCGATTAACGATAGCAAGTACGAACATATACTCGAAAGTTTTGCCGAGAAACTAGTAAAAGAGAGACCTTCACCTTCATTTGCCATGGCTGCATCCAATAGTTCATATCTGCATACCGATGCACCACCAACACCGGGATTGCTTCCTTCATGGCTTTCGAATTCCAACAATGCCGCACCGGTTAGGCCAAATTCACCATCAGTGACATTAAGCCTCTCTCCGTCGACAGTCGCAGCGCCTCCTCCGTGGATGCAGCAGCCAGTACGAGGACCCGACAACACGCCTCTTGTCCTTGGAAACGTAGCTCCTCATGGAGCTGTTCTATCTTACGGTGAAAACATGGTAATGTCTGAGTTGGTGGATTGCTGTAAGGAGTTGGAAGAAGTGCATCATGCATTAGCAGCACATAAGAAAGAGGCAGCGTGGAGGTTAAGCCGAGTGGAACTGCAGTTGGAATCAGAGAAAGCAAGTCGAAGAAGGGAGAAGATGGAGGAAATTGAAGCAAAGATAAAAGCTTTAAGGGAGGAACAAGCCGTTGCGTTGGATAGAATTGAAGGAGAATATAGGGAACAGTTAGCAGGATTGAGAAGAGATGCAGAAACCAAAGAGCAGAAACTGGCTGAACAATGGGCTACAAAGCATTTGCGCCTTACGAAGTTTCTAGAACAAGTAGGGTGTAGATCAAGGCTTGCTGAACAAAATGGAAGATAA 1092 0.4625 MSDMHLEMKDRQRWRAEEDALLRAYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVISLQATHGNKWKKIAAQVPGRTAKRLGKWWEVFKEKQQRETKGSINRTVDPINDSKYEHILESFAEKLVKERPSPSFAMAASNSSYLHTDAPPTPGLLPSWLSNSNNAAPVRPNSPSVTLSLSPSTVAAPPPWMQQPVRGPDNTPLVLGNVAPHGAVLSYGENMVMSELVDCCKELEEVHHALAAHKKEAAWRLSRVELQLESEKASRRREKMEEIEAKIKALREEQAVALDRIEGEYREQLAGLRRDAETKEQKLAEQWATKHLRLTKFLEQVGCRSRLAEQNGR 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01141 363 SUPERFAMILY Homeodomain-like 11 105 IPR009057 -
Tsu04g01141 363 Coils Coil 273 310 - -
Tsu04g01141 363 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Tsu04g01141 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Tsu04g01141 363 PANTHER TRANSCRIPTION FACTOR AS1 8 363 IPR031055 GO:0005634|GO:0006351|GO:0010338
Tsu04g01141 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 60 IPR017930 -
Tsu04g01141 363 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 8 363 - -
Tsu04g01141 363 Pfam Myb-like DNA-binding domain 14 74 - -
Tsu04g01141 363 SMART sant 10 62 IPR001005 -
Tsu04g01141 363 SMART sant 65 113 IPR001005 -
Tsu04g01141 363 CDD SANT 13 60 IPR001005 -
Tsu04g01141 363 Gene3D - 69 129 - -
Tsu04g01141 363 CDD SANT 70 111 IPR001005 -
Tsu04g01141 363 Gene3D - 11 65 - -
Tsu04g01141 363 ProSiteProfiles Myb-like domain profile. 6 60 IPR001005 -
Tsu04g01141 363 Coils Coil 312 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01141 Tsu-Chr4 11285062 11288176 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01141 8 354 MYB Transcription Factor Family AT2G37630 67.391 3.96e-160 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu04g01141 Myb_DNA-bind_6 3.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01141 K09422 - gmx:100819082 614.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01141 04 11285062 11288176 Tsu04g01141 04 11285062 11288176 ECH