Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01136 atgTCTCCACCAGGTTCATCAAGATGGAGCCCTACAACTGAACAGCTTATGATTTTAGAAGAACTGTATAGAAGTGGAATTAGAACTCCTAGTGCTTCTCAAATTCAGCAAATAACAACTCACCTTTCTTTCTATGGTAgaatagaaggaaaaaatgttttctATTGGTTTCAAAATCATAAGGCTAGGGATAGGCAGAAACTTAGAAGGAAACTTAATAAACAACTGCAGCTACAgcaacaacagcagcaacaacaattaCAACAACTACAAGTTCATCATTATCAACATCAACTCAATCATGATAATATCATTAGTAACCATTTTGTTGGTACTACTTTTGGTGGTTACCCTTTTGGATCTAATGCACAagacttttcattttttaactcACCTAACTTGCTTTTTGAGggaTCAGTAGCTGCAAACACATCACAAGGAGCAATGAATTGCAAATGGATAAATGGTTATAATAATCATCAAAGTTTGGTGGAGAAGAAAGATATTGCATTCAACAACTATGGTAATTGGACACTTATGGATAATGTTAATCATGAACCAACTTCATGTTGCACTAAACCTATCAAGACTCTTGATCTCTTTCCACTCACAACAACAAGAATCAAAGAAGACTAG 636 0.3113 MSPPGSSRWSPTTEQLMILEELYRSGIRTPSASQIQQITTHLSFYGRIEGKNVFYWFQNHKARDRQKLRRKLNKQLQLQQQQQQQQLQQLQVHHYQHQLNHDNIISNHFVGTTFGGYPFGSNAQDFSFFNSPNLLFEGSVAANTSQGAMNCKWINGYNNHQSLVEKKDIAFNNYGNWTLMDNVNHEPTSCCTKPIKTLDLFPLTTTRIKED 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01136 211 Gene3D - 2 67 - -
Tsu04g01136 211 CDD homeodomain 8 67 IPR001356 GO:0003677
Tsu04g01136 211 Pfam Homeodomain 7 66 IPR001356 GO:0003677
Tsu04g01136 211 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 1 210 IPR044555 GO:0003700|GO:0099402
Tsu04g01136 211 Coils Coil 65 93 - -
Tsu04g01136 211 PANTHER WUSCHEL-RELATED HOMEOBOX 3 1 210 - -
Tsu04g01136 211 SMART HOX_1 4 71 IPR001356 GO:0003677
Tsu04g01136 211 SUPERFAMILY Homeodomain-like 7 66 IPR009057 -
Tsu04g01136 211 ProSiteProfiles 'Homeobox' domain profile. 2 67 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01136 Tsu-Chr4 11223144 11224261 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01136 1 211 Wox Gene Family AT2G28610 43.750 1.60e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Tsu04g01136 Homeodomain 6.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01136 - - cam:101510991 260.766