Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01132 ATGGGTAACAGAATCAGCAGAATCTGCCTCTGTTCTGCCGGCGCCGGAGAAATCTCCGGCAGGTTTTATAACAGCTTTGCCTTGTTGTCCAAGAAACATGACAAAGCTATTTGCAACTCCATCTCCTATGTGAGACCGAACCCGCCTGGATTCTCCGGCGATACATTACCGGAAGAGGACGATGACATCCTAGTGACTTTCCGGTCGGTCTTCGGAGCCACCGTGAGTGCAAACTCCTCATCGACATCTTCCATTTTCCTTGATGACTCTCTTCAACAGAGCACTGTTTTGGATTCCTCTGCTTCATTTGAAAGCTTTGGTTCCTTCACTCCTACAATGGTGCATCCTCAACATCAAAATCAGAATGATCCTCGTAATTCTTCTGTGTGTGGCTCCATTGAAAAAGGGTTATCTTGGAGCCCTTTTAATCCTGTGGTGAATGATGAAGATTCCATTGAAAAAGCTTCAGAACATGTGAAGATAAAGAAGCCTAAGATCAGCTTGAAGAAGATTCTGAGTAGAGTTTTTTCTTCTGGAAAAGGATCAATTTTTAAGAATAGTGATAATGTTAATGCAAATGCAAGAGTGAGTTGTAGTACTAGTTTGAGTGATGAATTGAGATTACATAATAAGAACTATTTGGaggattatgatgatgatgatggtggtggatATGGATGTGATGATGATTTGTCTATGGTTTGTGAGAATCTTCATATGGCTCAAGGAAAAGGCGGTGAGGATCGTATGCATATCGTGATTTGCGAGGAACATGGATGGGTTTATGTAGGAATTTATGATGGATTTAATGGTCCTGATGCAACTGATTATCTTCTTAATAATATGTTTTATGCTGTGCATGATGAGCTTAAAGGGTTTTTATGTAATCGAAATCGAAATAGTAGTAATAAAGTGAAAAGTGAAGAGGGTTTTAGTCACAGAGATGTGTTAGAAGCTCTTTCTGAGGCAATGAGGAAAACTGAGGAGGCATTTTTGAAGATAATTAATGAGATGATTAATCATAATCCTGTTTTAGCTATGATGGGTTCTTGTGTTTTGGTTATGTTGATGAAAGGTGAAGATGTTTATTTGATGAATGTTGGTGATAGTCGCGCTGTTTTAGCTACTCGGATTGGGAATCATCCTCAACTAACCATGGATCATAGCACTCATGtgaaagagGAGGTTTATAGAATCAGACAGGAGCATCCAGATGATCCTTCTGCGGTAACTAAAGGCCGAGTGAAAGGTTACTTAAATATCACAAGGGCTTTTGGAGCAGGATTCCTTAAGCAGCCTAAACAAAATGATGCGATGTTAGAGACTTTCAAAGTTAACTACATAGGAGAATCTCCTTATATCACATGCTCCCCTTCACTAATTCACCACAGGCTCAACTCAAGTGACAAATTTCTTATACTGTCTTCTGATGGACTTTACCAATACTTCACAAATGAAGAAGCAGTTGCAAAAGTAGAGTCATTCATCACCATGTTTCCAGATAAAAATCCAGCACAACTTCTCACTGAAGAAGCACTTAGTCAAGCAGCCAAAAAAGCAGGTATGGAGTTCCATGAGTTGCTTGATATACCACAAGGGGAAAGAAGGCTATACCATGATGACATTTCCATTGTCATAATATCCTTGGAGGGAAAAATATGGCGTTCATTGCTGTAA 1677 0.3876 MGNRISRICLCSAGAGEISGRFYNSFALLSKKHDKAICNSISYVRPNPPGFSGDTLPEEDDDILVTFRSVFGATVSANSSSTSSIFLDDSLQQSTVLDSSASFESFGSFTPTMVHPQHQNQNDPRNSSVCGSIEKGLSWSPFNPVVNDEDSIEKASEHVKIKKPKISLKKILSRVFSSGKGSIFKNSDNVNANARVSCSTSLSDELRLHNKNYLEDYDDDDGGGYGCDDDLSMVCENLHMAQGKGGEDRMHIVICEEHGWVYVGIYDGFNGPDATDYLLNNMFYAVHDELKGFLCNRNRNSSNKVKSEEGFSHRDVLEALSEAMRKTEEAFLKIINEMINHNPVLAMMGSCVLVMLMKGEDVYLMNVGDSRAVLATRIGNHPQLTMDHSTHVKEEVYRIRQEHPDDPSAVTKGRVKGYLNITRAFGAGFLKQPKQNDAMLETFKVNYIGESPYITCSPSLIHHRLNSSDKFLILSSDGLYQYFTNEEAVAKVESFITMFPDKNPAQLLTEEALSQAAKKAGMEFHELLDIPQGERRLYHDDISIVIISLEGKIWRSLL 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01132 558 SUPERFAMILY PP2C-like 244 550 IPR036457 -
Tsu04g01132 558 Gene3D - 228 555 IPR036457 -
Tsu04g01132 558 SMART PP2C_4 231 547 IPR001932 -
Tsu04g01132 558 Coils Coil 317 337 - -
Tsu04g01132 558 Pfam Protein phosphatase 2C 287 518 IPR001932 -
Tsu04g01132 558 PANTHER PROTEIN PHOSPHATASE 2C 293 558 IPR015655 GO:0004722|GO:0006470
Tsu04g01132 558 PANTHER PROTEIN PHOSPHATASE 2C 16 293 IPR015655 GO:0004722|GO:0006470
Tsu04g01132 558 ProSiteProfiles PPM-type phosphatase domain profile. 231 549 IPR001932 -
Tsu04g01132 558 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 16 293 - -
Tsu04g01132 558 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 293 558 - -
Tsu04g01132 558 CDD PP2Cc 246 549 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01132 Tsu-Chr4 11194545 11197401 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01132 1 556 PP2C-type Phosphatase Gene Family AT1G07630 42.708 5.22e-164 480
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01132 - K01102 gmx:100804061 669.463