Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01125 ATGGCAAGAAAATATGAAGGTCGTGCCGTGGGAATAGACCTTGGAACCACATACTCTTGTGTTGCAGTGTGGCAGGAGCAACACAGTAGAGTGGAGATAATCCATAATGATCAAGGAAACAGGACCACTCCTTCATTTGTTGCTTTTAGTGATGATCAAAGGTTGATTGGTGATGCTGCTAAGAATCAAACTTCTGCCAACCCCGAAAACACTGTCTTTGATATAATGTTGTGGCCATTCAAGGTCGTTGCCGGTGTAAATGACAAACCGATGATTACCCTTAAGTATAAGGATCAAGAGAAGCAATTTTGTGCTGAGGAAATATCATCTATGGTCCTTACAAAGATGCGAGAAGTTGCTGAGGCATATCTGCAGTCTCCTGTCAAGAATGCTGTTGTTACCGTGCCGGCTTACTTCAATGATGCTCAGCGAAAAGCCACAATAGATGCCGGTGCCATTGCTGGCATTAATGTCATTCGGATAATCAATGAACCTACCGCTGCTGCTATTGCATATGGTCTTGATAAGAGAAGTGACTTTGATGGTAAACGgaatatttttgtctttgaCCTTGGCGGTGGTACTTTTGATGTGTCTATTCTCACTATTAATGGTGATGTCTTTGAAGTAAAAGCCACAGCTGGAAACACTCACCTAGGTGGAGAAGACTTTGATAACAGAATGGTGAACTACTTCGTAGAggagtttaaaaaaaagaataaagtgGATATTAGTGGTAATGCAAGAGCCTTGAGGAGGTTGAGAACTGCTTGTGAAAAGGCAAAGAGGATACTCTCCTTTGCTTTTGTAACCACTGTTGATGTAGATTCTTTATTCAATGGAATTGACTTCTCTTCGTCAATATCTCGTGCCAAGTTTGAGGAAATTAATATGGACCTTTTCAATGAGTGTATGGAAATTGTTGCGAGTTGTCTCAGTGATTCAAAGGTATACAAGAGTGATATTGATGATGTGGTTCTTGTTGGCGGTTCGTCTAGGATACCCAAAGTGCAGGATCTATTGCAGGACTTTTTCAAGGGGAAGGATCTGTGCAAGAGTATCAATCTGGATGAGGCTGTTGCTTATGGTGCGGCTGTTCAAGCTGCTATTTTGAGTGAAGGGTTTAAGAATGTACCAAACTTGGTGCTGCGAGATGTTACCGCATTGTCACTTGGTATTGAAGCAAATGTTGAATGTATCTTGGATGTGGTGATTCCTAGGAATACTTCTGTACCTGTCAAGAAGACCAAAAGATATTCTACCGCTAAAGATAACCATTGCAGTGTCCCGATTAAGGTTTATGAAGGTGAGAGAGCAAGAGCCGCAGACAACAATCTGCTTGGTTCGTTCTTCCTCTCTTGCCTTCCAGGTGCTCCTCGAGGCCAGCCCTTAGATGTTTGCTTTTCCATCGATGAAAATGGTATCCTAACAGTTTCTGCCAAGGAAATATCTACAGGAAATATGAACGAGATTACCATAACCAATGACAAAGAAAGGTTGTCaacatttgaaattaaaaaaatgatcgAAGAAGCTGAGACATACCATTTGGAAGATCAGAAATTTTTAAGGAAGGCCGAAGTAATAAGTGGATTGGATTCTTGTGTTTACAATATTAAGAATGCTTTACAGAAGAAGGATGTTTATTCCATGCTCACCTATCAAGAAAGTGAAAAGATCAACAATGCAATTACTGTTGCGATGAATTTGCTTGATAAGAATAACCAACAGAAAGAAATTGATGTTCTTGAGGGTCATCTGAAGCAGCTGAATAGCATGTTGGAAAACCTTAAAGTCAAGACTGgctag 1809 0.3947 MARKYEGRAVGIDLGTTYSCVAVWQEQHSRVEIIHNDQGNRTTPSFVAFSDDQRLIGDAAKNQTSANPENTVFDIMLWPFKVVAGVNDKPMITLKYKDQEKQFCAEEISSMVLTKMREVAEAYLQSPVKNAVVTVPAYFNDAQRKATIDAGAIAGINVIRIINEPTAAAIAYGLDKRSDFDGKRNIFVFDLGGGTFDVSILTINGDVFEVKATAGNTHLGGEDFDNRMVNYFVEEFKKKNKVDISGNARALRRLRTACEKAKRILSFAFVTTVDVDSLFNGIDFSSSISRAKFEEINMDLFNECMEIVASCLSDSKVYKSDIDDVVLVGGSSRIPKVQDLLQDFFKGKDLCKSINLDEAVAYGAAVQAAILSEGFKNVPNLVLRDVTALSLGIEANVECILDVVIPRNTSVPVKKTKRYSTAKDNHCSVPIKVYEGERARAADNNLLGSFFLSCLPGAPRGQPLDVCFSIDENGILTVSAKEISTGNMNEITITNDKERLSTFEIKKMIEEAETYHLEDQKFLRKAEVISGLDSCVYNIKNALQKKDVYSMLTYQESEKINNAITVAMNLLDKNNQQKEIDVLEGHLKQLNSMLENLKVKTG 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01125 602 Gene3D - 112 369 - -
Tsu04g01125 602 PRINTS 70kDa heat shock protein signature 8 21 - -
Tsu04g01125 602 PRINTS 70kDa heat shock protein signature 38 50 - -
Tsu04g01125 602 PRINTS 70kDa heat shock protein signature 60 68 - -
Tsu04g01125 602 PRINTS 70kDa heat shock protein signature 131 151 - -
Tsu04g01125 602 PRINTS 70kDa heat shock protein signature 194 204 - -
Tsu04g01125 602 PRINTS 70kDa heat shock protein signature 322 338 - -
Tsu04g01125 602 PRINTS 70kDa heat shock protein signature 354 374 - -
Tsu04g01125 602 PRINTS 70kDa heat shock protein signature 380 399 - -
Tsu04g01125 602 PRINTS 70kDa heat shock protein signature 461 477 - -
Tsu04g01125 602 Pfam Hsp70 protein 9 597 IPR013126 GO:0005524|GO:0140662
Tsu04g01125 602 Gene3D Actin; Chain A, domain 4 220 303 - -
Tsu04g01125 602 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 377 528 IPR029047 -
Tsu04g01125 602 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 376 531 IPR029047 -
Tsu04g01125 602 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Tsu04g01125 602 Gene3D - 177 351 - -
Tsu04g01125 602 ProSitePatterns Heat shock hsp70 proteins family signature 3. 325 339 IPR018181 -
Tsu04g01125 602 Gene3D - 78 111 - -
Tsu04g01125 602 PANTHER HEAT SHOCK 70 KDA PROTEIN 4 599 - -
Tsu04g01125 602 PANTHER HEAT SHOCK PROTEIN 70KDA 4 599 IPR013126 GO:0005524|GO:0140662
Tsu04g01125 602 SUPERFAMILY Actin-like ATPase domain 181 372 IPR043129 -
Tsu04g01125 602 Gene3D - 1 77 - -
Tsu04g01125 602 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 529 600 IPR029048 -
Tsu04g01125 602 Coils Coil 573 600 - -
Tsu04g01125 602 ProSitePatterns Heat shock hsp70 proteins family signature 2. 188 201 IPR018181 -
Tsu04g01125 602 SUPERFAMILY Actin-like ATPase domain 9 176 IPR043129 -
Tsu04g01125 602 Gene3D - 532 600 IPR029048 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01125 Tsu-Chr4 11031661 11033647 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01125 1 593 Calmodulin-binding Proteins AT3G12580 62.582 0.0 760
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01125 K03283 - gmx:102667572 836.639