Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01124 ATGGCAAGAAAATACGAAGGTCGTGCCGTGGGAATAGACCTTGGAACCACATACTCTTGTGTTGCAGTGTGGCAGGAGCAACACAGTAGAGTGGAGATAATCCATAATGATCAAGGAAACAAGATCACTCCTTCATTTGTTGCTTTTACTGATGATCAAAGGTTGATTGGTGATGCTGCTAAGAATCAAACTTCCGCCAACCCCGAAAACACCGTATTTGATGCTAAGAGATTAATTGGTAGGAAATTTAGTGACCCTGTTGTTCAGAAAGATATAATGTTGTGGCCATTCAAGGTCGTTGCCGGTGTAAATGACAAACCCATGATTACCCTTAAGTATAAGGGTGAAGACAAGCAATTTTGTGCTGAGGAAATATCATCAATGATCCTTACAAAGATGCGAGAAGTTGCTGAGGCATATCTGCAGTCTCCTCGAAAAGCTACTATAGATGCTGGTGCCATTGCTGGCCTTAATGTCATTCGGATAGTCAATGAACCTACTGCTGCTGCTATTGCATATGGTCTTGATAAGAGAAGTGACTTTGATGGTAAACGgaatatttttgtctttgatcTTGGCGGTGGTACTTTTGATGTATCTATTCTCACTATTAAGGGTGATGTCTTTGAAGTAAAAGCCACCGGTGGAAACACTCACCTAGGGGGAGAAGACTTTGATAACAGAATGGTGAGATACTTTGTAGAGGAGttcaaaaagaagaataaagTGGATATTCGTGGTAACGCAAGAGCCTTGAGGAGGTTGAGAACTGCTTGTGAAAGGGCAAAGAGGATACTCTCCTTTGCTTTTGTAACCACTGTTGATGTAGATTCTTTATTTAATGGAATTGACTTTTCTTCATCAATATCTCGTGCCAAGTTTGAGGAAATTAATTTGGACCTTTTCAATGAGTGTATGAGAATTGTCGCGAGTTGTCTTAGTGATTCAAAGATATACAAGAATGATATCGATGATGTTGTTCTTGTGGGCGGTTCGTCCAGAATTCCCAAAGTGCAGGATCTATTGCAAGACTTTTTCAAGGGGAAGGATCTGTGCAAGAGTATCAATCTGGATGAGGCTGTTGCTTATGGTGCGGCTGTTCAAGCTGCTAATTTGAGTGAAGGGTTTAAGAATGTACCGAACTTGGTGTTGCGAGATGTTACCCCATTGTCACTTGGTATTGCAGCAAATGTTGAAGATATCATCATGTCTGTGGTGATTCCTAGGAATACTTCTGTACCTGTGAAGAAGACCAGAGGATATTCTACCGCTATAGATAACCATTGCAGTGTCTCGATTCAGGTTTATGAAGGTGAGAGAGCAAGAGCCACAGACAACAGTCTGCTTGGTTCGTTCTTCCTTTCTTGCCTTCCAGGTGGTCCTCGAGGCCAGCCCTTAGATGTTTGCTTTTCCATCGATGAAAATGGTATCCTAACAGTTTCTGCTAAGGAAATATCTACAGGAAATATGAACGAGATTACCATAACCAATGACAAAGAAAGGTTGTCaacatttgaaattaaaaaaatgatcgAAGAAGCTGAGACATACCATTTGGAAGATCAGAAATTTTTAAGGAAGGCCGAAGTAATAAGTGGATTGGATTCTTGTGTTTACAATATTAAGAATGCTCTAAAGAAGAAGGATATTTATTTAATGCTCACCTATCGAGAAAGTGAAAAGATCAACAATGCAATTACTGTTGCGATGAATTTGCTTGATAAGAATAACCAACAAAAAGAAATCGATGTTCTTGAGCGTCATCTGAAGCAGCTGAATAGCATGTTGGAATACCTTAAAGTCAAGACCGgctag 1815 0.3912 MARKYEGRAVGIDLGTTYSCVAVWQEQHSRVEIIHNDQGNKITPSFVAFTDDQRLIGDAAKNQTSANPENTVFDAKRLIGRKFSDPVVQKDIMLWPFKVVAGVNDKPMITLKYKGEDKQFCAEEISSMILTKMREVAEAYLQSPRKATIDAGAIAGLNVIRIVNEPTAAAIAYGLDKRSDFDGKRNIFVFDLGGGTFDVSILTIKGDVFEVKATGGNTHLGGEDFDNRMVRYFVEEFKKKNKVDIRGNARALRRLRTACERAKRILSFAFVTTVDVDSLFNGIDFSSSISRAKFEEINLDLFNECMRIVASCLSDSKIYKNDIDDVVLVGGSSRIPKVQDLLQDFFKGKDLCKSINLDEAVAYGAAVQAANLSEGFKNVPNLVLRDVTPLSLGIAANVEDIIMSVVIPRNTSVPVKKTRGYSTAIDNHCSVSIQVYEGERARATDNSLLGSFFLSCLPGGPRGQPLDVCFSIDENGILTVSAKEISTGNMNEITITNDKERLSTFEIKKMIEEAETYHLEDQKFLRKAEVISGLDSCVYNIKNALKKKDIYLMLTYRESEKINNAITVAMNLLDKNNQQKEIDVLERHLKQLNSMLEYLKVKTG 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01124 604 Pfam Hsp70 protein 9 597 IPR013126 GO:0005524|GO:0140662
Tsu04g01124 604 Gene3D - 178 352 - -
Tsu04g01124 604 Coils Coil 575 602 - -
Tsu04g01124 604 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 377 533 IPR029047 -
Tsu04g01124 604 Gene3D - 73 128 - -
Tsu04g01124 604 PRINTS 70kDa heat shock protein signature 38 50 - -
Tsu04g01124 604 PRINTS 70kDa heat shock protein signature 8 21 - -
Tsu04g01124 604 PRINTS 70kDa heat shock protein signature 195 205 - -
Tsu04g01124 604 PRINTS 70kDa heat shock protein signature 463 479 - -
Tsu04g01124 604 PRINTS 70kDa heat shock protein signature 323 339 - -
Tsu04g01124 604 PRINTS 70kDa heat shock protein signature 60 68 - -
Tsu04g01124 604 PRINTS 70kDa heat shock protein signature 132 152 - -
Tsu04g01124 604 PRINTS 70kDa heat shock protein signature 355 375 - -
Tsu04g01124 604 PRINTS 70kDa heat shock protein signature 381 400 - -
Tsu04g01124 604 ProSitePatterns Heat shock hsp70 proteins family signature 3. 326 340 IPR018181 -
Tsu04g01124 604 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Tsu04g01124 604 Gene3D - 534 600 IPR029048 -
Tsu04g01124 604 Gene3D - 10 370 - -
Tsu04g01124 604 ProSitePatterns Heat shock hsp70 proteins family signature 2. 189 202 IPR018181 -
Tsu04g01124 604 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 378 530 IPR029047 -
Tsu04g01124 604 PANTHER HEAT SHOCK PROTEIN 70KDA 4 601 IPR013126 GO:0005524|GO:0140662
Tsu04g01124 604 PANTHER HEAT SHOCK 70 KDA PROTEIN 4 601 - -
Tsu04g01124 604 SUPERFAMILY Actin-like ATPase domain 9 177 IPR043129 -
Tsu04g01124 604 SUPERFAMILY Actin-like ATPase domain 182 372 IPR043129 -
Tsu04g01124 604 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 531 602 IPR029048 -
Tsu04g01124 604 Gene3D Actin; Chain A, domain 4 221 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01124 Tsu-Chr4 11025652 11027652 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01124 1 595 Calmodulin-binding Proteins AT3G12580 61.338 0.0 743
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01124 K03283 - gmx:102667572 832.787