Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01123 ATGGAGGTGGATACAGAGGAGTTGTGTTGTATGGAGAATAAGCAATCGACAGTTGCTTCTTGCTCGTCTTCTGAAGGCAGTGGATGTGGCAGTGGCAGTGCATTTCAAAAGTCACCGGGGATATGTAGCCCCACGGCCACTTCGACATCGCCCTCACATCGGAGGACGACAGGTCCTATAAGGCGTGCTAAGGGTGGTTGGACAGCAGAGGAGGATGAGACATTGAGGAATGCTGTTGCAGCTTTTAAGGGAAAGCATTGGAAGAAAATAGCTGAGTTTTTTAAAGATCGATCAGAAGTTCAATGTCTGCACAGATGGCAAAAAGTTCTTAATCCAGAACTTGTTAAAGGACCGTGGACACAGGAGGAGGATGATAAAATTGTTGAACTGGTGTCAAAATATGGACCTACAAAATGGTCCTTGATTGCCAAGTCTTTGCCTGGTCGAATAGGGAAGCAGTGTCGAGAGAGGTGGCACAATCATCTTAATCCTGACATAAAGAAGGATGCCTGGACTTTGGAAGAGGAACTAGCCTTGATGAATGCTCATCGTATACATGGGAACAAATGGGCTGAAATAGCTAAGGTCCTTCCTGGAAGGACTGATAATGCAATAAAGAACCACTGGAATAGTTCTTTGAAGAAGAAGTTAGATTTTTACTTAGCCACGGGAAAACTTCCCCCAGTTCCAAAAAGCAATCCACTGGTTGCTGCCAAAGATACAATTAAACGTTCTGCTACTAAACCAATACTTGTTTCatctaataaagaattaaatgtTGCTGTCGAAACATCGTCTGAAACCACAGCCATTAGTAAGCCAGATGACAGCGGCAAGAACCAGTTTGAGTCCTCAGGGACAGCTAGAGAAGTTGGTGATTCTTCAAGTGTACCGACAAATGAATCTGCTGATTTTGACTGTGTAGAATGCATGCCTGGACCATCCAATGTTGATCTTAGCTGTGCAAACTCAGAACATATATCAAGAGTCAATTTTGGAACAACTTATGGGTCAAAATCTGAGAATTCTGCACTCAATGGAAACTCGTTAACTGAGCATTGTTTCAATAATGGTAAAATGAGCAATAGCAATAGCAGGTTAATCGGGACATCAGcacaagaaaatcaaacttgtgGTTCTTTGTATTATGAGCCGCCAGTTTTACCTGGTTCAGTTCCTTTAGATTCTCTTCATTTAAGTATTCTCTGCATGCAGAATGATTACTGTTCTAAGTTGTCACCCATGGGTTACATCACTCCACCTCGTGCGAGGGATAGTGAATTATGTACGGAGACCCCTGAATCAATATTGAGAAAGGCTGCTAATACTTATCCAAATACTCCTTCCATATATAGGAGGAGAAGAACTGGAGACCAACCACTTACTTCTCCTAGTAAAGTTCTAAAAGTCGACAATGATTCACATGCTTCTAATGAACCAGATAGAACCAAGAATAATTCTGGTTCTGAAGCTCGGACGTTGCCTGATAGTCCTGCAAGCCATGGCAATAAGAGTGCTAATCTCAATAATAAGGCATTCAATGCATCTCCACCATACCGGTTAAGAACCAAACGAACAGCAGTTGTCAAGTCTGTGGAGAAACAACTTGAATTTGCGTTTGACAAAGAGAAGAATGATGACAGTATGAACGCACTGGAAAAATCTGCAAAGAGGGGCAATGTTATGACTGAGGATTGTCTGCATGAAAGAAAACTGGTAGTGACGTAG 1728 0.4155 MEVDTEELCCMENKQSTVASCSSSEGSGCGSGSAFQKSPGICSPTATSTSPSHRRTTGPIRRAKGGWTAEEDETLRNAVAAFKGKHWKKIAEFFKDRSEVQCLHRWQKVLNPELVKGPWTQEEDDKIVELVSKYGPTKWSLIAKSLPGRIGKQCRERWHNHLNPDIKKDAWTLEEELALMNAHRIHGNKWAEIAKVLPGRTDNAIKNHWNSSLKKKLDFYLATGKLPPVPKSNPLVAAKDTIKRSATKPILVSSNKELNVAVETSSETTAISKPDDSGKNQFESSGTAREVGDSSSVPTNESADFDCVECMPGPSNVDLSCANSEHISRVNFGTTYGSKSENSALNGNSLTEHCFNNGKMSNSNSRLIGTSAQENQTCGSLYYEPPVLPGSVPLDSLHLSILCMQNDYCSKLSPMGYITPPRARDSELCTETPESILRKAANTYPNTPSIYRRRRTGDQPLTSPSKVLKVDNDSHASNEPDRTKNNSGSEARTLPDSPASHGNKSANLNNKAFNASPPYRLRTKRTAVVKSVEKQLEFAFDKEKNDDSMNALEKSAKRGNVMTEDCLHERKLVVT 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01123 575 ProSiteProfiles Myb-like domain profile. 111 162 IPR001005 -
Tsu04g01123 575 MobiDBLite consensus disorder prediction 481 516 - -
Tsu04g01123 575 Gene3D - 116 167 - -
Tsu04g01123 575 Pfam Myb-like DNA-binding domain 116 162 IPR001005 -
Tsu04g01123 575 Pfam Myb-like DNA-binding domain 64 110 IPR001005 -
Tsu04g01123 575 Pfam Myb-like DNA-binding domain 168 211 IPR001005 -
Tsu04g01123 575 SUPERFAMILY Homeodomain-like 113 209 IPR009057 -
Tsu04g01123 575 CDD SANT 118 162 IPR001005 -
Tsu04g01123 575 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 110 IPR017930 -
Tsu04g01123 575 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 111 166 IPR017930 -
Tsu04g01123 575 MobiDBLite consensus disorder prediction 439 517 - -
Tsu04g01123 575 CDD SANT 170 213 IPR001005 -
Tsu04g01123 575 ProSiteProfiles Myb-like domain profile. 163 213 IPR001005 -
Tsu04g01123 575 MobiDBLite consensus disorder prediction 439 471 - -
Tsu04g01123 575 ProSiteProfiles Myb-like domain profile. 59 110 IPR001005 -
Tsu04g01123 575 MobiDBLite consensus disorder prediction 32 56 - -
Tsu04g01123 575 CDD SANT 67 110 IPR001005 -
Tsu04g01123 575 MobiDBLite consensus disorder prediction 264 300 - -
Tsu04g01123 575 MobiDBLite consensus disorder prediction 32 59 - -
Tsu04g01123 575 Gene3D - 169 226 - -
Tsu04g01123 575 SUPERFAMILY Homeodomain-like 65 120 IPR009057 -
Tsu04g01123 575 PANTHER MYB PROTEIN-RELATED 22 487 - -
Tsu04g01123 575 PANTHER MYB-RELATED PROTEIN B-LIKE 22 487 - -
Tsu04g01123 575 Gene3D - 63 115 - -
Tsu04g01123 575 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 167 217 IPR017930 -
Tsu04g01123 575 SMART sant 115 164 IPR001005 -
Tsu04g01123 575 SMART sant 63 112 IPR001005 -
Tsu04g01123 575 SMART sant 167 215 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01123 Tsu-Chr4 11003748 11012867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01123 54 547 MYB Transcription Factor Family AT5G02320 49.710 1.02e-143 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu04g01123 Myb_DNA-bind_6 4.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01123 K09422 - gmx:100793280 874.389