Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01116 ATGGCAACAGCAACAtacccaccaccaccaccttatTATAGACTTTACAAAGATTActtggaagatgatgatgaatctgCTCCAAAGCCTCCACTTCCAATTGAAGGGACTTACATTTGTTTTGGTGGAAATTACACTACCAGTGATGTTCTACCAAGCTTGGAAGAACAAGGGGTCCGCCAGCTATATTCTAAGGGGCCGAATGTTGATTTCAAGAAGGAACTGAGATCACTTAATAGAGAACTGCAACTACACATTTTGGAGCTTGCTGATATTCTTATTGAGAGGCCATCCCAGTATGCAAGAAGAATCGAAGAAATTTCGACTGTATTCAAAAACCTACAtcatcttttaaattcattgcaTCCTCATCAGGCGAGATCAACATTGATTCACATTATGGAACTTCAGATAGAGCGCCGCAAACAAGCCCTGGAGGACATAAAGAGGAGGAGAGAAGTAGCTCAAAGAATTCTTAACGAGTCCTTATTAACACTCGATGGCCATTAG 510 0.3608 MATATYPPPPPYYRLYKDYLEDDDESAPKPPLPIEGTYICFGGNYTTSDVLPSLEEQGVRQLYSKGPNVDFKKELRSLNRELQLHILELADILIERPSQYARRIEEISTVFKNLHHLLNSLHPHQARSTLIHIMELQIERRKQALEDIKRRREVAQRILNESLLTLDGH 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01116 169 Coils Coil 68 88 - -
Tsu04g01116 169 Pfam MED7 protein 4 158 IPR009244 GO:0003712|GO:0006357|GO:0016592
Tsu04g01116 169 Coils Coil 131 158 - -
Tsu04g01116 169 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 7 2 168 IPR009244 GO:0003712|GO:0006357|GO:0016592
Tsu04g01116 169 SUPERFAMILY Mediator hinge subcomplex-like 67 160 IPR037212 GO:0016592
Tsu04g01116 169 Gene3D - 61 160 IPR044888 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01116 Tsu-Chr4 10896805 10900301 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MED7 Tsu04g01116 Med7 1.8e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01116 K15148 - gmx:100792250 282.722