Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01114 ATGGCGCAAACCAAAACTTTCATCGTTCTTCTTCGTAGCCTAATCCACATTGCAACCGAAATCTCTCAAATCACAACCTTCAATCCTCTCATCAAAACTCAATGCTTTGATCTCAGCCGTAGGCTCAATTTCCTTGTTCCTCTTTTTCATCACCTCGTTAACGACGTCGTTTATGTCCCTTGTGAAACTATCGTTTCGCTTCAACTTGCTTTTCTTTCTGCTAAAGATTTGCTTCTATCTTGCTCTCAATCGAGTCAGCTCTATATGATACTGGAGAGGGAGAAAATTAAGTTCAAATTCAATGATCTCGCTTCTCGTTTTGAACAAGCTATAATTAAGATTTGCTGTGACAAACTTAATATTTCTGAGGACCTCAAGGAGCAGGTTGCACTTGTGACTGCTCAGTTTAGAAGGGCCAAAGAGCAATTCGATTCACCTTGTCTTGAGCTTTATGAGCATTTGTTGCCTATCTATAACCAGAGCTGTGATGTGAATACTGAATCTGCTGCGTTACGTTTAATCTGTGAAAAACTACAATTTGTGAGTGTGGAAGATATCAAACAAGAGTCAATTGCCATACATAAAATGATTCTTGATGGATATGGGGTTTTCGAGAAAAGCGCGGATTTTGAGAACACGCAGGGGTTGTCAATAGTgctgaaaaaaattgaagattttttgtTGAAGGAATCTGAAAATAATGGAGGTGGTTGTGTTGAGAAAACCACACAGGTGTTGTCGAGAAGGGATTTGCCTTCTCACACTGATGAGACATGCGTGAAATTATGTTGTCAGTCACTAGTTGTGCCGGAGGAGTTTCGCTGCCCAATATCACTTGAGCTAATGAAAGATCCTGTTATCATTTCCACAGGGCAGACATATGAACGAGCTTGCATAAAGAAATGGCTTGATGCAGGGCATCGAACATGTCCCATTACTCAGCAGATTCTTTCCAGCACCATCCTCATACCCAACCATGCTTTATACAGCTTGATATCAAATTGGTGTGAGGCAAATGGAGTGGAACCACCTAGAACTAGAAGGTTAGGAAATTTCTGGATCTGTAAGGAAACCTCAGATGGCTCTTCTGAATTAATAAATCTTGATACTTTGATAAGGAAACTTACATCCAGTTACATTGAGGATCAGCGTTTTGCAGCAGGAGAGCTCCGTATTCTTGCCAAACACGCTGATCAAAATCGAATTTTGATTGGTGAAGCTGGTGCTATACCCCTCCTTGTCGATCTCCTCTACATTCCTGATGCTGGCACCCAGGAGCAAGCGGTAACTGCTCTTCTCAATCTATCGATCTACGACGGAAACAAAGAGCGCATCATGGCTTCTGAGGCTGTGCCGGGAATACTCCATGTTCTAAAAAATGGTAGTATGCAAGCTCGTGAAAATGCGGCAGCCACCTTTTTCAGCCTCTCTAAAGCGGATGAGAACAAAGTGGTAATTGGTGCATCTGGAGCAATCAACGCACTAGTTGCTCTCTTCGGCGAAGGAAGTCAAAGAGGAAAACTCGATGCTGCAACAGCACTATTCAAACTGTGTTTCATCCATGGCAACAAAGGGCGCGCTATTAAGGCCGGTATTGTGCCCAAATTGGTAGAAATGTTAACAGAACCAGATGAGGAGATGAGGGATGGGGCATTGGCAATCATCTCTTTAATAGTTAGCCACCCGGATGCAATAGAAGCATTTAGATCGACATATGCTATTCCCATTTTGGTAGAATTCATCAGTAATGGGTCTTCCAAGAACAAAGAAAATGCAACTTCAGTGCTTCTGTACCTATGTAGAGGAGATCCATGTTACCTGTTGATTGTCGCTTCACTTGGTGTGATCAGTCCTCTTTCAGAACTGGCAGAAAATGGTTCAGAAAGGGGAAAGCGGAAAGCTGCACAGCTTCTCGAGTTGTTAGGAATTGTGAGACCATTGTGA 1944 0.4213 MAQTKTFIVLLRSLIHIATEISQITTFNPLIKTQCFDLSRRLNFLVPLFHHLVNDVVYVPCETIVSLQLAFLSAKDLLLSCSQSSQLYMILEREKIKFKFNDLASRFEQAIIKICCDKLNISEDLKEQVALVTAQFRRAKEQFDSPCLELYEHLLPIYNQSCDVNTESAALRLICEKLQFVSVEDIKQESIAIHKMILDGYGVFEKSADFENTQGLSIVLKKIEDFLLKESENNGGGCVEKTTQVLSRRDLPSHTDETCVKLCCQSLVVPEEFRCPISLELMKDPVIISTGQTYERACIKKWLDAGHRTCPITQQILSSTILIPNHALYSLISNWCEANGVEPPRTRRLGNFWICKETSDGSSELINLDTLIRKLTSSYIEDQRFAAGELRILAKHADQNRILIGEAGAIPLLVDLLYIPDAGTQEQAVTALLNLSIYDGNKERIMASEAVPGILHVLKNGSMQARENAAATFFSLSKADENKVVIGASGAINALVALFGEGSQRGKLDAATALFKLCFIHGNKGRAIKAGIVPKLVEMLTEPDEEMRDGALAIISLIVSHPDAIEAFRSTYAIPILVEFISNGSSKNKENATSVLLYLCRGDPCYLLIVASLGVISPLSELAENGSERGKRKAAQLLELLGIVRPL 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01114 647 SMART Ubox_2 272 335 IPR003613 GO:0004842|GO:0016567
Tsu04g01114 647 SUPERFAMILY RING/U-box 269 343 - -
Tsu04g01114 647 Gene3D - 506 646 IPR011989 -
Tsu04g01114 647 Coils Coil 122 142 - -
Tsu04g01114 647 Gene3D - 354 505 IPR011989 -
Tsu04g01114 647 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 342 IPR013083 -
Tsu04g01114 647 Pfam U-box domain 269 339 IPR003613 GO:0004842|GO:0016567
Tsu04g01114 647 SUPERFAMILY ARM repeat 367 641 IPR016024 -
Tsu04g01114 647 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 408 450 IPR000225 GO:0005515
Tsu04g01114 647 PANTHER U BOX DOMAIN-CONTAINING 8 641 - -
Tsu04g01114 647 Pfam Armadillo/beta-catenin-like repeat 398 436 IPR000225 GO:0005515
Tsu04g01114 647 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 8 641 - -
Tsu04g01114 647 SMART arm_5 397 437 IPR000225 GO:0005515
Tsu04g01114 647 SMART arm_5 479 519 IPR000225 GO:0005515
Tsu04g01114 647 SMART arm_5 602 643 IPR000225 GO:0005515
Tsu04g01114 647 SMART arm_5 561 601 IPR000225 GO:0005515
Tsu04g01114 647 SMART arm_5 520 560 IPR000225 GO:0005515
Tsu04g01114 647 Gene3D - 8 116 IPR036537 GO:0007166
Tsu04g01114 647 CDD RING-Ubox_PUB 273 315 IPR045210 -
Tsu04g01114 647 ProSiteProfiles U-box domain profile. 268 342 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01114 Tsu-Chr4 10867918 10873413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01114 12 639 U-box Gene Family AT3G46510 47.253 0.0 579
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01114 - - var:108326899 738.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01114 04 10867918 10873413 Tsu04g01114 04 10867918 10873413 ECH