LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu04g01114	ATGGCGCAAACCAAAACTTTCATCGTTCTTCTTCGTAGCCTAATCCACATTGCAACCGAAATCTCTCAAATCACAACCTTCAATCCTCTCATCAAAACTCAATGCTTTGATCTCAGCCGTAGGCTCAATTTCCTTGTTCCTCTTTTTCATCACCTCGTTAACGACGTCGTTTATGTCCCTTGTGAAACTATCGTTTCGCTTCAACTTGCTTTTCTTTCTGCTAAAGATTTGCTTCTATCTTGCTCTCAATCGAGTCAGCTCTATATGATACTGGAGAGGGAGAAAATTAAGTTCAAATTCAATGATCTCGCTTCTCGTTTTGAACAAGCTATAATTAAGATTTGCTGTGACAAACTTAATATTTCTGAGGACCTCAAGGAGCAGGTTGCACTTGTGACTGCTCAGTTTAGAAGGGCCAAAGAGCAATTCGATTCACCTTGTCTTGAGCTTTATGAGCATTTGTTGCCTATCTATAACCAGAGCTGTGATGTGAATACTGAATCTGCTGCGTTACGTTTAATCTGTGAAAAACTACAATTTGTGAGTGTGGAAGATATCAAACAAGAGTCAATTGCCATACATAAAATGATTCTTGATGGATATGGGGTTTTCGAGAAAAGCGCGGATTTTGAGAACACGCAGGGGTTGTCAATAGTgctgaaaaaaattgaagattttttgtTGAAGGAATCTGAAAATAATGGAGGTGGTTGTGTTGAGAAAACCACACAGGTGTTGTCGAGAAGGGATTTGCCTTCTCACACTGATGAGACATGCGTGAAATTATGTTGTCAGTCACTAGTTGTGCCGGAGGAGTTTCGCTGCCCAATATCACTTGAGCTAATGAAAGATCCTGTTATCATTTCCACAGGGCAGACATATGAACGAGCTTGCATAAAGAAATGGCTTGATGCAGGGCATCGAACATGTCCCATTACTCAGCAGATTCTTTCCAGCACCATCCTCATACCCAACCATGCTTTATACAGCTTGATATCAAATTGGTGTGAGGCAAATGGAGTGGAACCACCTAGAACTAGAAGGTTAGGAAATTTCTGGATCTGTAAGGAAACCTCAGATGGCTCTTCTGAATTAATAAATCTTGATACTTTGATAAGGAAACTTACATCCAGTTACATTGAGGATCAGCGTTTTGCAGCAGGAGAGCTCCGTATTCTTGCCAAACACGCTGATCAAAATCGAATTTTGATTGGTGAAGCTGGTGCTATACCCCTCCTTGTCGATCTCCTCTACATTCCTGATGCTGGCACCCAGGAGCAAGCGGTAACTGCTCTTCTCAATCTATCGATCTACGACGGAAACAAAGAGCGCATCATGGCTTCTGAGGCTGTGCCGGGAATACTCCATGTTCTAAAAAATGGTAGTATGCAAGCTCGTGAAAATGCGGCAGCCACCTTTTTCAGCCTCTCTAAAGCGGATGAGAACAAAGTGGTAATTGGTGCATCTGGAGCAATCAACGCACTAGTTGCTCTCTTCGGCGAAGGAAGTCAAAGAGGAAAACTCGATGCTGCAACAGCACTATTCAAACTGTGTTTCATCCATGGCAACAAAGGGCGCGCTATTAAGGCCGGTATTGTGCCCAAATTGGTAGAAATGTTAACAGAACCAGATGAGGAGATGAGGGATGGGGCATTGGCAATCATCTCTTTAATAGTTAGCCACCCGGATGCAATAGAAGCATTTAGATCGACATATGCTATTCCCATTTTGGTAGAATTCATCAGTAATGGGTCTTCCAAGAACAAAGAAAATGCAACTTCAGTGCTTCTGTACCTATGTAGAGGAGATCCATGTTACCTGTTGATTGTCGCTTCACTTGGTGTGATCAGTCCTCTTTCAGAACTGGCAGAAAATGGTTCAGAAAGGGGAAAGCGGAAAGCTGCACAGCTTCTCGAGTTGTTAGGAATTGTGAGACCATTGTGA	1944	0.4213	MAQTKTFIVLLRSLIHIATEISQITTFNPLIKTQCFDLSRRLNFLVPLFHHLVNDVVYVPCETIVSLQLAFLSAKDLLLSCSQSSQLYMILEREKIKFKFNDLASRFEQAIIKICCDKLNISEDLKEQVALVTAQFRRAKEQFDSPCLELYEHLLPIYNQSCDVNTESAALRLICEKLQFVSVEDIKQESIAIHKMILDGYGVFEKSADFENTQGLSIVLKKIEDFLLKESENNGGGCVEKTTQVLSRRDLPSHTDETCVKLCCQSLVVPEEFRCPISLELMKDPVIISTGQTYERACIKKWLDAGHRTCPITQQILSSTILIPNHALYSLISNWCEANGVEPPRTRRLGNFWICKETSDGSSELINLDTLIRKLTSSYIEDQRFAAGELRILAKHADQNRILIGEAGAIPLLVDLLYIPDAGTQEQAVTALLNLSIYDGNKERIMASEAVPGILHVLKNGSMQARENAAATFFSLSKADENKVVIGASGAINALVALFGEGSQRGKLDAATALFKLCFIHGNKGRAIKAGIVPKLVEMLTEPDEEMRDGALAIISLIVSHPDAIEAFRSTYAIPILVEFISNGSSKNKENATSVLLYLCRGDPCYLLIVASLGVISPLSELAENGSERGKRKAAQLLELLGIVRPL	647

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Tsu04g01114	647	SMART	Ubox_2	272	335	IPR003613	GO:0004842\|GO:0016567
Tsu04g01114	647	SUPERFAMILY	RING/U-box	269	343	-	-
Tsu04g01114	647	Gene3D	-	506	646	IPR011989	-
Tsu04g01114	647	Coils	Coil	122	142	-	-
Tsu04g01114	647	Gene3D	-	354	505	IPR011989	-
Tsu04g01114	647	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	269	342	IPR013083	-
Tsu04g01114	647	Pfam	U-box domain	269	339	IPR003613	GO:0004842\|GO:0016567
Tsu04g01114	647	SUPERFAMILY	ARM repeat	367	641	IPR016024	-
Tsu04g01114	647	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	408	450	IPR000225	GO:0005515
Tsu04g01114	647	PANTHER	U BOX DOMAIN-CONTAINING	8	641	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu04g01114	Tsu-Chr4	10867918	10873413	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu04g01114	12	639	U-box Gene Family	AT3G46510	47.253	0.0	579

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu04g01114	-		-	var:108326899	738.799

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu04g01114	04	10867918	10873413	Tsu04g01114	04	10867918	10873413	ECH

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