Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01113 ATGGTTTATACTTCCCTTCCACCATATATGGATCCAGCCAACTGGAATCAACAGCAACCAAATCTTCAAGGGGCAAACACTATTGTCAACACTCCTCTTTTTACTACACCATCACAGCCTCCACCATCGAATCTGACACCATCACAGCCTCATGCAGGCTCGATTAGGCCTGGTTCGATGGCAGATAGGGCTAGGATGGCCAACATACCTATGCAAGAACCATCACAAAAATGTCCAAGGTGTGATTCCACCAACACAAAGTTTTGCTACTTCAACAACTATAGCCTCTCACAGCCGCGCCACTTTTGCAAGACCTGTAGAAGGTATTGGACAAGGGGCGGTGCTCTAAGAAGTGTACCGGTTGGAGGTGGTTGCCGAAGGAACAAGAGGACTAAATCCAACAGCAACAACACCTCAAAGTCTCCGGTTAGCTCAGATCGCCAAACTAGCTCTGCAAACAACTCTCCCGCGGTACTCAGTTCCCCGACTCCACCACCGATGAGATTCATGGCTCCTTTACATCAACTCAACGATCACCTCGGTCAAATAGGGTTAAACTATGGTTTTTCTGGTCCAATGGGAGGAGTAGGAGACTTGAATTTCCATATAGGAGGCTCTTTAGGTGGAGTCGTTGGTAACGGCAGTGTTAGTGGTGGTGTTGGTGGTTCTGCTTCGATTTTACCTGTTGGTGGTTTCGAGCAATGGAGAATGCCACAACAAACTCAACAATTTCCATTCTTGACAAGCTTAGAAGCTTCTTCTTCACATGGATTGTTGTATCCATTTGAAGGTGGTGGTGGTAATAATCAAGCACATATATATGGTGGTGTCCCTAAGGTATTATCAACTAATTCTAGTgtgaaaatggaagaaaatCAATCTAGACAATTCTTGGGAATGATCAATAATAATactaacaacaataataacCCTAATAGTGAACAATATTGGAGTGCTTCTAGTGGTAATGGTGGTGCTACTTCAGCTTGGACAGATCTTGCAGCTTTTAACTCTTCTTCAACAACTACCAATTCCAACTATAgaacttaa 1050 0.4267 MVYTSLPPYMDPANWNQQQPNLQGANTIVNTPLFTTPSQPPPSNLTPSQPHAGSIRPGSMADRARMANIPMQEPSQKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRTKSNSNNTSKSPVSSDRQTSSANNSPAVLSSPTPPPMRFMAPLHQLNDHLGQIGLNYGFSGPMGGVGDLNFHIGGSLGGVVGNGSVSGGVGGSASILPVGGFEQWRMPQQTQQFPFLTSLEASSSHGLLYPFEGGGGNNQAHIYGGVPKVLSTNSSVKMEENQSRQFLGMINNNTNNNNNPNSEQYWSASSGNGGATSAWTDLAAFNSSSTTTNSNYRT 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01113 349 MobiDBLite consensus disorder prediction 32 58 - -
Tsu04g01113 349 MobiDBLite consensus disorder prediction 120 168 - -
Tsu04g01113 349 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 15 342 - -
Tsu04g01113 349 MobiDBLite consensus disorder prediction 128 158 - -
Tsu04g01113 349 ProSitePatterns Zinc finger Dof-type signature. 78 114 IPR003851 GO:0003677|GO:0006355
Tsu04g01113 349 MobiDBLite consensus disorder prediction 301 321 - -
Tsu04g01113 349 Pfam Dof domain, zinc finger 75 130 IPR003851 GO:0003677|GO:0006355
Tsu04g01113 349 ProSiteProfiles Zinc finger Dof-type profile. 76 130 IPR003851 GO:0003677|GO:0006355
Tsu04g01113 349 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 342 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01113 Tsu-Chr4 10843727 10844940 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01113 47 339 C2C2-Dof Transcription Factor Family AT3G55370 41.720 2.27e-50 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tsu04g01113 zf-Dof 2.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01113 - - gmx:100796820 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01113 04 10843727 10844940 Tsu04g01113 04 10843727 10844940 ECH