Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01111 ATGGGGTGTGGTAATGGTTTAGATCTGCATGCAAAGATGGTGAATGAAAGAGAAGAAGTTGGTTTTGAAAATTTAGAAGTTTCTGAGAGAGAGTTATGGTTGAATAATACTACAAATGATCAtcatcatgatgatgatgatcttttaggtatgaatatgaatgatgatgatgcatCTATGTTCTATGCTGATTTTCCACCTTTACCTGATTTTCCATGCAtgtcatcatcttcttcatcttcatcatcttcaacaccaTTGAAAACTATTGCATGTACTTCAACTACAACtactacttcttcttcttcctctgcttCATCTTCCTCTGCAGCTTCTTGGGCTATTTTGAAATCAGATCTTGAAGAAGATCATGGTGAGAAAATCAAGAGTGCTCAAAATGGTTACATGCATCAACATGatgatcatcatcatccattAGATCAGCATGCAACAACTTTATCATCAACTGCATCTATGGAGATatctcaacaacaacaagatcTTGGTGTTTCTAATAATAATCATGTTGTTGGTGTTGATGTTGGTGGTAGTGATTGCATGGATGATGATGCTATTATGGATACTTTTGGTTACATGGAGCTTTTAGAAGCAAATGACTTTTTTGACCCTAcatctatttttcaaaatgatgAAGAAAATCCTTTAGTTGATTTCACACAAGAACAACAAGTTCAAATGCAAGATGagtatcatcatcaacaaaatcaacaagtTCCAATGATAATGCATGATGATAGTGAAACAAAACTACATCaacaagaagaaaataatgatgtttttgtttgtgatgTTACAAACAATGAAGAAGAGaataataatattcttcaaGGAGATGCatgtgatgatgatggtgtTCTTAATGATGAGATGAGTAGTGTTTTTTTGGAATGGCTTAAATCTAATAAAGATAGTGTATCAGCAAATGATTTAAGAAATGTGAAGCTTAAGAAATCAACAATTGAAAGTGCTGCTTCAAGATTAGGTGGTGGAAAAGAAGGAATGAAAAGATTGTTGAAACTTATTCTTGAATGGGTTCAAACTAGTCATCTACAAAACAAAAGACTCAAAGAAAACACAACATTAGCCTCAAATCTTGTTCCTCAAACACAACAATTTCAAGATCCATGTCAAAACCAAAACACATCAAACACTTTTGCACCTGTTGAAACAAACACTTGTTTTAACCAATGGTTAGATCAAACACAACCTCTCATTGTACCTCCACAACAATTTTCACAACCAATGGTTGGAGTTGGAGTTGGAGTTGGATATGTTGGTGATCCTTATAACACAAATGGTTCGGTTTCGAATAACCTTAACCTTAACCCTAATACCTACCAACCTGTTGCTACTAATGATCAATATCATCATATGTTGGAATCAAATCAATCATGGGGTGCTTCACAATTCAATGTTGCAACAAACTACAATCAATCATTTGTTGAAAACAATAATAGCAATATGATTCAACCGCACGGTGTGAGTTTTGGAGGGTATGGAAATCAATATAATTCTTATCAGTTTTTTCATGGACCTGGTGATAGGTTAATGAGGTTAGGTCCTTCTGCTACAAAAGAAGCTAGGAAGAAGAGAATGGCAAGGCAAAGAAGGTTTGCGTCTCATCATCGGCAtcagaataataataataataatcagcTTCATCATCAGAATATTCAAGGTTCTGATTCACTTGCAAGATTGGGAAGTGGTGATAGTTGCACCAATGTTGTTGGTGCCGGTTCTCATGCAAATCCAGCTAACTGGATGTATTGGCAGACTATGCCTGGTGGGGCAGCAGCTTCCATGGCACCTGTTGTTCCGGCTGAGCCGACACAGCCTCTGGTGGATCGTGACCGTCCCTCCATGCAGACACATAATTCTCATCAGGGTCGAAATGCATCGGATAGGAGACAGGGTTGGAAGCCTGAGAAGAACTTGAGGTTCCTTCTACAAAAGGTGTTGAAGCAAAGTGATGTTGGAAGTTTGGGGAGAATTGTTTTACCAAAAAAAGAAGCAGAAACACATTTGCCAGAATTGGAGGCAAGAGATGGAATTTCCATTACAATGGAAGACATTGGAACTTCTCGAGTTTGGAATATGCGTTATAGATACTGGCCAAACAATAAAAGCAGAATGTATTTGCTTGAGAATACTGGTGACTTTGTGAAAGCTAATGGACTCCAAGAAGGAGATTTCATAGTGATTTACTCTGATGTGAAGTGTGGCAAATTTATGATAAGAGGAGTTAAAGTGAGACAACAACAAGGAGCAAAACCAGAGGCGAAAAAAGCAGGAAAATCACAGAAAAACCAGCATGGGAATAATTCAGCAAATACAGCTGGAAATGCTGCTGTGGATAATAATGGAACACCATCTTCaccaaagagaaaaaaatga 2418 0.3296 MGCGNGLDLHAKMVNEREEVGFENLEVSERELWLNNTTNDHHHDDDDLLGMNMNDDDASMFYADFPPLPDFPCMSSSSSSSSSSTPLKTIACTSTTTTTSSSSSASSSSAASWAILKSDLEEDHGEKIKSAQNGYMHQHDDHHHPLDQHATTLSSTASMEISQQQQDLGVSNNNHVVGVDVGGSDCMDDDAIMDTFGYMELLEANDFFDPTSIFQNDEENPLVDFTQEQQVQMQDEYHHQQNQQVPMIMHDDSETKLHQQEENNDVFVCDVTNNEEENNNILQGDACDDDGVLNDEMSSVFLEWLKSNKDSVSANDLRNVKLKKSTIESAASRLGGGKEGMKRLLKLILEWVQTSHLQNKRLKENTTLASNLVPQTQQFQDPCQNQNTSNTFAPVETNTCFNQWLDQTQPLIVPPQQFSQPMVGVGVGVGYVGDPYNTNGSVSNNLNLNPNTYQPVATNDQYHHMLESNQSWGASQFNVATNYNQSFVENNNSNMIQPHGVSFGGYGNQYNSYQFFHGPGDRLMRLGPSATKEARKKRMARQRRFASHHRHQNNNNNNQLHHQNIQGSDSLARLGSGDSCTNVVGAGSHANPANWMYWQTMPGGAAASMAPVVPAEPTQPLVDRDRPSMQTHNSHQGRNASDRRQGWKPEKNLRFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGISITMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVKANGLQEGDFIVIYSDVKCGKFMIRGVKVRQQQGAKPEAKKAGKSQKNQHGNNSANTAGNAAVDNNGTPSSPKRKK 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01111 805 MobiDBLite consensus disorder prediction 775 798 - -
Tsu04g01111 805 MobiDBLite consensus disorder prediction 530 563 - -
Tsu04g01111 805 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 28 788 IPR044800 GO:0003700
Tsu04g01111 805 CDD BfiI_C_EcoRII_N_B3 655 756 - -
Tsu04g01111 805 Gene3D - 653 772 IPR015300 -
Tsu04g01111 805 ProSiteProfiles B3 DNA-binding domain profile. 657 759 IPR003340 GO:0003677
Tsu04g01111 805 MobiDBLite consensus disorder prediction 617 648 - -
Tsu04g01111 805 Pfam B3 DNA binding domain 658 754 IPR003340 GO:0003677
Tsu04g01111 805 MobiDBLite consensus disorder prediction 759 805 - -
Tsu04g01111 805 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 28 788 - -
Tsu04g01111 805 MobiDBLite consensus disorder prediction 536 550 - -
Tsu04g01111 805 SUPERFAMILY DNA-binding pseudobarrel domain 656 753 IPR015300 -
Tsu04g01111 805 SMART B3_2 657 757 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01111 Tsu-Chr4 10802191 10805900 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01111 18 787 B3 DNA Binding Superfamily AT3G24650 45.477 1.26e-160 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu04g01111 B3 1.7e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01111 - - gmx:100795226 843.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01111 04 10802191 10805900 Tsu04g01111 04 10802191 10805900 ECH