Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01110 ATGTTGAAACTTGAAGAGTATGGATACATGATGAAGATAACCGAGAAAAGTGATGTTTACAGCTATGGTATAGTTGTATTAGAAGTACTAACAGGTAAGCAACCAATTGATCCAACAATACCAGATGGACTTCACATTGTTGATTGGGTTCGACAGAAAAGAGGAGGAGTTGAAGTGCTAGATGAAAACTTAAGAGCAAGACCAGAATCCGAAATCGAAGAAATGTTGCAAACTTTAGGTGTTGCATTGTTATGTGTAACCTCAAGTCCTGATGATAGACCAACAATGAAAGATGTTGTTGCAATGATGAAAGAGATTAAACAAGAAAGAGATGAATGTGTCAAGGTTTTCGATGGAACTTCTAGAAATCATCAACATGAAAGTAATCATAATGAAGTAGAATCGTCGGAAATGATGAAAGATTCATGTCCTACAActagcagcagcagcagcataAATATGCATTTACATTACTCTCCTCATAGTTCTACAACACTAAGTTAA 504 0.3373 MLKLEEYGYMMKITEKSDVYSYGIVVLEVLTGKQPIDPTIPDGLHIVDWVRQKRGGVEVLDENLRARPESEIEEMLQTLGVALLCVTSSPDDRPTMKDVVAMMKEIKQERDECVKVFDGTSRNHQHESNHNEVESSEMMKDSCPTTSSSSSINMHLHYSPHSSTTLS 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01110 167 Pfam Protein tyrosine and serine/threonine kinase 11 101 IPR001245 GO:0004672|GO:0006468
Tsu04g01110 167 ProSiteProfiles Protein kinase domain profile. 1 106 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01110 167 MobiDBLite consensus disorder prediction 118 167 - -
Tsu04g01110 167 MobiDBLite consensus disorder prediction 118 137 - -
Tsu04g01110 167 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RCH1 6 129 - -
Tsu04g01110 167 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 6 129 - -
Tsu04g01110 167 Gene3D Transferase(Phosphotransferase) domain 1 5 140 - -
Tsu04g01110 167 MobiDBLite consensus disorder prediction 138 167 - -
Tsu04g01110 167 SUPERFAMILY Protein kinase-like (PK-like) 10 126 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01110 Tsu-Chr4 10794780 10795283 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01110 6 108 Receptor kinase-like Gene Family AT5G56040 57.009 1.80e-35 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tsu04g01110 PK_Tyr_Ser-Thr 2.6e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01110 - - gmx:100794698 243.817