Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01109 ATGAAATCACTATCTTACTTCTTCCACCTCCTCATCTTCACACTCCTCCTCCCACTTCCCCTCACTTCCAGTTCCTCCAATGAACTCACTACCTTACTTTCATGGACACATTCTCTCCACCCTTTTTCCAATTGGAACCCTCTAGACACAAATCCATGCAAATGGTCATTCATAACTTGTTCATCACAAAACTTTGTAACTGAAATCAATATCCAAAATGTCCAATTAGCCCTTCCTTTTCCTTCAAATATTTCTTCACTTTCCAATCTTCAAAAGCTAGTCATTTCTGGAACTAACCTCACTGGAACAATCCCTTCTGATATTGGTAACTGTCTTAATCTTATAACCATTGATCTTAGCTCAAATAGTCTTGTTGGTGAAATTCCTTCAACTATTGGAAACctaaaaaatcttcaaaacttAGTTTTAAACTCTAACCAATTAACTGGTTCAATACCTATTGAACTTTGTGATTGTGTTAATCTCAAAAACCTTGACATTTTTGATAATGATCTTAGTGGAAACCTTCCTATTGAGATAGGGAACCTTTCAAATCTTGAAGTTATAAGAGCTGGTGGAAACAAAGATATTGTAGGGAAGATTCCAGAAGAATTAGGTGAATGCAAGAATTTGACTGTTTTAGGGCTTGCAGATACTAAAATTTCAGGTTCAATACCTAATTCATTAGGTAAATTAATCAAGCTTCAAACAATATCTATTTATAGTACTTTGATTTCTGGTAAAATTCCTAATGAAATTGGTAACTGTTCTGAGCTTGTGAACTTGTTTTTGTATGAGAATGATCTTTCTGGTGAGATTCCTTTTGAGTTAGGTAAGCTTATGAAGCTTGAAAAGATTTTGCTTTGGCAAAATAGTTTTGTTGGTAGAATACCTGATGAAATTGGAAATTGTAGTAGTTTGAAGATTCTTGATTTGTCTTTGAATTATTTCTCCGGTGGAATACCGGAGAGTTTAGGGAAACTATCGAATCTTGAAGAGCTTATGTTGAGTAACAATAATGTTTCTGGTTCGATACCAGCTTCGGTTTCAAATTTGACAAATTTGATTCAGTTGCAGTTAGATACAAATGAGATATCAGGTTTGATTCCGGTCGAGATTGGAAAGTTGACAATGTTAACGGTTTTTTTCGCGTGGCAGAACAAACTTGAAGGTCGAATTCCATCGGAGTTAGGCGATTGTTTAAGCCTTGAGGCTTTGGATTTGTCTTATAACAAACTCAGTGATAGTTTACCTTCAGGTCTTTTTAAGCTTCAGAATTTAACTAAGCTTTTGTTGATTTCTAATGATATCTCAGGTTTCATTCCTCCTGAGATTGGTAATTGTAGTTCTCTTATTCGACTTCGGCTTTTAGATAACAAAATCAGTGGTGAGATACCAAGAGAAATAGGTTTTCTTAATAACCTTAGTTTCCTTGATTTGTCTGAAAATCGTCTTAGTGGTTCGGTGCCATTAGAGATTGGAAAATGTAAAGAGCTTCAAATGTTGAATCTAAGTAATAACTCTCTTTCTGGTGATTTGCATAGTTTCTTGTCTTCTCTTACAATGCTAGAGGTTTTGGATGTTTCGATGAATAATTTTTCCGGTGAGGTTCCGATGAGTATTGGTCAATTAACTTCGCTTCTTCGAGTTATTTTAAGCAAAAACTCTTTCTCTGGATCAATTCCTTCAACTCTTGGGAAATGCTCAGGTATTCAACTTCTTGACCTTAGCAGCAACATGTTCTCGGGGAGCATACCGCGAGAATTGTTTCAAATTGAAGCACTTGATATTGCTTTGAATTTGAGTCACAATGCATTATCAGGAGTGATTCCAGTTGAGATTTCGGCTCTAAACAAGCTCTCGGTTCTAGACCTTTCGCATAACATGTTTGAAGGTGATTTGACGGTGTTTTCAGGCCTTGAAAATCTTGTTTCGCTGAACATTTCATACAACAAATTCACTGGTTATTTACCAGACAACAAGTTGTTTCATCTACTAGCAGCAACAGATTTGGTTGGAAATCAAGGTTTGTGTCCTAATGGTCATGATTCATGTTTCATTGAAAATGCTGCAATGGCAAAGATGTTAAACCGTTCTAATTCTAAGAGGTCGGAGATGATTAAAGTGGCCATTGGTTTGCTAAGTTTCTTAACTGTTGCAATGATAATCATTGGAGTTGTTACAGTCTTTCGAGCAAGGAAAATCGTTCGAGACGACAATGATTCCGAGATGGGAAGAGGTGATTCATGGCCTTGGCAGTTCACACCATTCCAAAAGGTCAACTTTTGTGTGGAGCAAATTCTAAAGTGTTTGGTGGAATCCAATGTAATTGGAAAAGGGTGTTCGGGGATAGTTTATCGCGCGGAAATGGAAAACGGCGATGTCATTGCTGTGAAAAGGCTATGGCCAACAACAACGGAAGCTAGATCAACCGCAAGATATGATCATAGTCAAAGTGACAAGTTAGCAGTTAATGGAGGAGTTCGTGATTCGTTTTCAGCTGAGGTAAAAACTCTCGGTTCGATTCGTCACAAGAACATTGTGAGGTTCTTAGGTTGCTGTTGGAACAGAAACACAAGGCTGCTTATGTATGATTACATGCCAAATGGGAGTCTAGGAAGTGTACTACATGAAGGAAATGATAATTGCTTGGATTGGCACATCAGATTCAAGATAATACTAGGGTCAGCTCAAGGTTTAGCTTATTTACACCATGATTGTGCTCCTCCTATTGTTCACAGAGACATTAAGGCCAACAACATCCTCATAGGCCTTCAATTTGAACCATACATAGCTGATTTTGGACTCGCTAAACTTGTTGATGATGGAGATTTTGCGAGATCTTCAAGTACACTTGCTGGTTCTTATGGTTACATAGCTCCTGGTTAG 2889 0.3718 MKSLSYFFHLLIFTLLLPLPLTSSSSNELTTLLSWTHSLHPFSNWNPLDTNPCKWSFITCSSQNFVTEINIQNVQLALPFPSNISSLSNLQKLVISGTNLTGTIPSDIGNCLNLITIDLSSNSLVGEIPSTIGNLKNLQNLVLNSNQLTGSIPIELCDCVNLKNLDIFDNDLSGNLPIEIGNLSNLEVIRAGGNKDIVGKIPEELGECKNLTVLGLADTKISGSIPNSLGKLIKLQTISIYSTLISGKIPNEIGNCSELVNLFLYENDLSGEIPFELGKLMKLEKILLWQNSFVGRIPDEIGNCSSLKILDLSLNYFSGGIPESLGKLSNLEELMLSNNNVSGSIPASVSNLTNLIQLQLDTNEISGLIPVEIGKLTMLTVFFAWQNKLEGRIPSELGDCLSLEALDLSYNKLSDSLPSGLFKLQNLTKLLLISNDISGFIPPEIGNCSSLIRLRLLDNKISGEIPREIGFLNNLSFLDLSENRLSGSVPLEIGKCKELQMLNLSNNSLSGDLHSFLSSLTMLEVLDVSMNNFSGEVPMSIGQLTSLLRVILSKNSFSGSIPSTLGKCSGIQLLDLSSNMFSGSIPRELFQIEALDIALNLSHNALSGVIPVEISALNKLSVLDLSHNMFEGDLTVFSGLENLVSLNISYNKFTGYLPDNKLFHLLAATDLVGNQGLCPNGHDSCFIENAAMAKMLNRSNSKRSEMIKVAIGLLSFLTVAMIIIGVVTVFRARKIVRDDNDSEMGRGDSWPWQFTPFQKVNFCVEQILKCLVESNVIGKGCSGIVYRAEMENGDVIAVKRLWPTTTEARSTARYDHSQSDKLAVNGGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNRNTRLLMYDYMPNGSLGSVLHEGNDNCLDWHIRFKIILGSAQGLAYLHHDCAPPIVHRDIKANNILIGLQFEPYIADFGLAKLVDDGDFARSSSTLAGSYGYIAPG 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01109 962 SMART serkin_6 771 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01109 962 SUPERFAMILY Protein kinase-like (PK-like) 749 961 IPR011009 -
Tsu04g01109 962 Pfam Leucine rich repeat 282 340 IPR001611 GO:0005515
Tsu04g01109 962 SMART LRR_typ_2 640 665 IPR003591 -
Tsu04g01109 962 SMART LRR_typ_2 472 496 IPR003591 -
Tsu04g01109 962 SMART LRR_typ_2 617 639 IPR003591 -
Tsu04g01109 962 SMART LRR_typ_2 328 352 IPR003591 -
Tsu04g01109 962 SMART LRR_typ_2 87 111 IPR003591 -
Tsu04g01109 962 SMART LRR_typ_2 135 159 IPR003591 -
Tsu04g01109 962 SMART LRR_typ_2 544 568 IPR003591 -
Tsu04g01109 962 SMART LRR_typ_2 400 424 IPR003591 -
Tsu04g01109 962 Gene3D Ribonuclease Inhibitor 355 424 IPR032675 -
Tsu04g01109 962 Gene3D Phosphorylase Kinase; domain 1 757 866 - -
Tsu04g01109 962 SMART LRR_sd22_2 472 493 - -
Tsu04g01109 962 SMART LRR_sd22_2 400 429 - -
Tsu04g01109 962 SMART LRR_sd22_2 617 642 - -
Tsu04g01109 962 SMART LRR_sd22_2 135 156 - -
Tsu04g01109 962 SMART LRR_sd22_2 328 354 - -
Tsu04g01109 962 SUPERFAMILY RNI-like 240 591 - -
Tsu04g01109 962 Gene3D Ribonuclease Inhibitor 175 275 IPR032675 -
Tsu04g01109 962 Gene3D Ribonuclease Inhibitor 25 174 IPR032675 -
Tsu04g01109 962 SUPERFAMILY L domain-like 37 294 - -
Tsu04g01109 962 Pfam Leucine rich repeat N-terminal domain 27 61 IPR013210 -
Tsu04g01109 962 ProSiteProfiles Protein kinase domain profile. 771 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01109 962 SUPERFAMILY RNI-like 599 701 - -
Tsu04g01109 962 ProSitePatterns Serine/Threonine protein kinases active-site signature. 911 923 IPR008271 GO:0004672|GO:0006468
Tsu04g01109 962 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RCH1 5 961 - -
Tsu04g01109 962 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 5 961 - -
Tsu04g01109 962 Gene3D Transferase(Phosphotransferase) domain 1 867 962 - -
Tsu04g01109 962 Pfam Protein kinase domain 773 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01109 962 Gene3D Ribonuclease Inhibitor 276 354 IPR032675 -
Tsu04g01109 962 ProSitePatterns Protein kinases ATP-binding region signature. 777 799 IPR017441 GO:0005524
Tsu04g01109 962 Gene3D Ribonuclease Inhibitor 425 689 IPR032675 -
Tsu04g01109 962 PRINTS Leucine-rich repeat signature 403 416 - -
Tsu04g01109 962 PRINTS Leucine-rich repeat signature 472 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01109 Tsu-Chr4 10791379 10794267 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01109 31 961 Receptor kinase-like Gene Family AT5G56040 46.779 0.0 821
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tsu04g01109 Pkinase 2.4e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01109 - - gmx:100815339 1467.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01109 04 10791379 10794267 Tsu04g01109 04 10791379 10794267 ECH