Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01103 ATGTCTGGTCAGAGAAGAGATTCAATGTTCAAAGAGAAACAGATTAATGATCTTGTTTCAAGGTTACAACTACTATTGCCTCAGCTCAACCAAAGAAACAACTCAAGgCAATCAACATCCAAGATCTTGCAGGAAACATTAAATCACATTAGGAGGCTGCAGAGAGAGGTGGAAGATCTAAGTGAAAGGCTAACACAATTGATGGATTCTGTGGATATCAATGATAGTGAGAGAAGAACTTTAGAGAACTTTTTGCAACATTAA 264 0.3674 MSGQRRDSMFKEKQINDLVSRLQLLLPQLNQRNNSRQSTSKILQETLNHIRRLQREVEDLSERLTQLMDSVDINDSERRTLENFLQH 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01103 87 Gene3D - 4 84 IPR036638 GO:0046983
Tsu04g01103 87 Pfam Helix-loop-helix DNA-binding domain 13 54 IPR011598 GO:0046983
Tsu04g01103 87 PANTHER DNA BINDING PROTEIN 1 86 - -
Tsu04g01103 87 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 13 71 IPR036638 GO:0046983
Tsu04g01103 87 SMART finulus 9 59 IPR011598 GO:0046983
Tsu04g01103 87 PANTHER DNA BINDING PROTEIN 1 86 IPR044172 -
Tsu04g01103 87 Coils Coil 43 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01103 Tsu-Chr4 10723875 10726464 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01103 10 85 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 48.052 1.38e-17 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu04g01103 HLH 2.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01103 - - gmx:100790746 77.7962