Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01102 ATGGAGTTACGGTTTTCATCACAGTTCGTTTTCAGCATTCTCGTTATTGCTCTTCTTTTTGCTTTCACAAACGGAATTCATCACAATGAGAATCACAAATCCACTGAATCACGGATTGTGAATGATGAAAAGAAGTTGAAGATGCAGAGCTTGAAGAATTCATCAATGGCGGAAAGTTCAAGTGATGATATCAACGAGCATGCAGTTGATAATCCAGAGGAGATTGCTTCAATGGTTGAAACGACTATACGCAATCACACAGAGAGAAGGAATCTGAATTTTTTCTCATGTGGGACTGGAAATCCAATGGATGACTGCTGGCGCTGTGATAAGCGTTGGGCCTTCCGGCGAAAGAGGTTAGCTGATTGTGCCATTGGTTTTGGTCGCAATGCAATTGGTGGGCGCGATGGAAGGTACTATGTTGTGACAGACCCTAAAGATGACGACCCTGTGAACCCAAGACCGGGAACTCTCCGTCATGCTGTCATTCAGGACAGGCCATTGTGGATTGTGTTCAAGAGAGATATGGTAATCACCCTGAAGCAAGAACTCATCATGAACAGCTTCAAGACTATTGATGGTCGTGGCGCAAATGTTCATATTGCCTTTGGAGCCTGCATTACTATCCAGTTTATAACCAATGTCATCATCCATGGTGTTCATATCCATGATTGTAAGCCGACAGGGAATGCTATGGTTCGCAGTTCCCCTTCCCATTTTGGATGGAGGACTATTGCTGATGGTGATGGCATTTCCATTTTTGGTTCCAGTCATATTTGGATTGATCACAATTCTCTTTCCAATTGTGCTGATGGTCTTGTTGATGCTATTATGGGCTCCACTGCCATTACCATTTCAAATAACTATTTCACCCACCACAATGAGGTTATGCTATTGGGTCACAGTGACTCCTATGTCCGTGACAAGCAAATGCAAGTAACCATTGCATACAACCATTTTGGGGAGGGTCTTATCCAAAGGATGCCAAGGTGTAGACACGGGTATTTCCACGTGGTAAACAATGACTATACCCACTGGGTGATGTATGCCATTGGAGGCAGTGCTGAACCCACAATTAACAGTCAAGGCAACAGATACCTTGCCCCTCAGAACCCTTTTGCTAAGGAGGTGACAAAGAGAGTGGATACAGGGGAAGGCATATGGAAAGGTTGGAATTGGAGGTCTGAGGGAGACCTTTTACTAAATGGAGCTTTTTTcactccatcaggagcaggagCTGGAGCAAGCTATGCTAGAGCATCAAGTTTAGGGGCCAAATCGTCTTCTTTAGTCGGTACTTTAACCTCAGGTGCTGGTGTTCTTAACTGTCGCAGAGGTGGCATGTGTTAA 1350 0.4363 MELRFSSQFVFSILVIALLFAFTNGIHHNENHKSTESRIVNDEKKLKMQSLKNSSMAESSSDDINEHAVDNPEEIASMVETTIRNHTERRNLNFFSCGTGNPMDDCWRCDKRWAFRRKRLADCAIGFGRNAIGGRDGRYYVVTDPKDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAFGACITIQFITNVIIHGVHIHDCKPTGNAMVRSSPSHFGWRTIADGDGISIFGSSHIWIDHNSLSNCADGLVDAIMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSAEPTINSQGNRYLAPQNPFAKEVTKRVDTGEGIWKGWNWRSEGDLLLNGAFFTPSGAGAGASYARASSLGAKSSSLVGTLTSGAGVLNCRRGGMC 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01102 449 SUPERFAMILY Pectin lyase-like 78 444 IPR011050 -
Tsu04g01102 449 Pfam Pectate lyase 183 364 IPR002022 -
Tsu04g01102 449 Gene3D - 100 442 IPR012334 -
Tsu04g01102 449 SMART amb_all 175 372 IPR002022 -
Tsu04g01102 449 PRINTS Pollen allergen Amb family signature 147 172 IPR018082 -
Tsu04g01102 449 PRINTS Pollen allergen Amb family signature 420 443 IPR018082 -
Tsu04g01102 449 PRINTS Pollen allergen Amb family signature 247 268 IPR018082 -
Tsu04g01102 449 PRINTS Pollen allergen Amb family signature 183 199 IPR018082 -
Tsu04g01102 449 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
Tsu04g01102 449 PRINTS Pollen allergen Amb family signature 391 415 IPR018082 -
Tsu04g01102 449 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Tsu04g01102 449 PRINTS Pollen allergen Amb family signature 123 140 IPR018082 -
Tsu04g01102 449 PANTHER PECTATE LYASE 38 446 - -
Tsu04g01102 449 PANTHER PECTATE LYASE 18-RELATED 38 446 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01102 Tsu-Chr4 10716147 10721962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01102 33 449 Polysaccharide Lyase AT4G13710 75.765 0.0 677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01102 K01728 - gmx:100809277 796.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01102 04 10716147 10721962 Tsu04g01102 04 10716147 10721962 ECH