Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01101 ATGGTAGTCATAGAGAACGAGAAACCCGACGATCAAAACGCGAATCAGTCCAACGCCACTGCCGCCGGCACCGAGGCCTCCGACGGCTTCGAAACCGCCAGTGAAGCCGATCTCGATAGCGACGGCGACGACAGTGAACCTATCAGCCGAGAAGAAGAACAGAAACATCGTGAACAACCGCAGCAGCAGCGGAAGGAGACAGAGGGAGAACATCAACAAGATGTTAATCAGAGAAGTATTTCTTCTGAAGATGCTTTGATCAATGAAGAAGAATTAAAACAGAAAGCATTGGGTGAAGCAAATGAAGCAAAAATAGAAGGTAACAAACTTTTTGTAGATGGGAAGTATGAGGAGGCATTATCTCAATATGAACATGCTTTACAAGTTGCACCAGACATGCCTTCATCTGTGGAAATTCGCTCAATATGCTATTCAAATCGTGCTGTGTGCTTTTTGAAACTGggaaaatatgaaaatacaattaaagAATGCACAAAAGCGTTGGAACTGAATCCTGCATATGTTAAAGCTTTGGTAAGAAGAGGAGAGGCTCATGAAAAGCTTGAACATTTTGAAGAGGCAATTGCTGATATGAAAAAGATCTTAGAAATTGATCCCTCAAATGATCAAGCTAGGAAAGCTATTCGTCGACTAGAGCCCTTAGCTGCTGTCAAACGggaaaaaatgaaagaagaaatgaTTGCAAAGTTGAAAGAAATGGGCAATTCTGTCTTAGGACGCTTTGGGATGAGCGTTGACAACTTCAAAGCAGTCAAAGATCCAAACACTGGTTCCTATTCTATCTCAATGGAACGCTAA 819 0.4078 MVVIENEKPDDQNANQSNATAAGTEASDGFETASEADLDSDGDDSEPISREEEQKHREQPQQQRKETEGEHQQDVNQRSISSEDALINEEELKQKALGEANEAKIEGNKLFVDGKYEEALSQYEHALQVAPDMPSSVEIRSICYSNRAVCFLKLGKYENTIKECTKALELNPAYVKALVRRGEAHEKLEHFEEAIADMKKILEIDPSNDQARKAIRRLEPLAAVKREKMKEEMIAKLKEMGNSVLGRFGMSVDNFKAVKDPNTGSYSISMER 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01101 272 Pfam Tetratricopeptide repeat 176 208 IPR013105 -
Tsu04g01101 272 ProSiteProfiles TPR repeat profile. 141 174 IPR019734 GO:0005515
Tsu04g01101 272 SUPERFAMILY TPR-like 98 217 IPR011990 GO:0005515
Tsu04g01101 272 SMART tpr_5 175 208 IPR019734 GO:0005515
Tsu04g01101 272 SMART tpr_5 141 174 IPR019734 GO:0005515
Tsu04g01101 272 SMART tpr_5 100 133 IPR019734 GO:0005515
Tsu04g01101 272 ProSiteProfiles TPR repeat profile. 175 208 IPR019734 GO:0005515
Tsu04g01101 272 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 24 271 - -
Tsu04g01101 272 MobiDBLite consensus disorder prediction 32 47 - -
Tsu04g01101 272 MobiDBLite consensus disorder prediction 9 27 - -
Tsu04g01101 272 Pfam Tetratricopeptide repeat 143 173 IPR001440 GO:0005515
Tsu04g01101 272 Gene3D Tetratricopeptide repeat domain 62 240 IPR011990 GO:0005515
Tsu04g01101 272 ProSiteProfiles TPR repeat profile. 100 133 IPR019734 GO:0005515
Tsu04g01101 272 Coils Coil 86 106 - -
Tsu04g01101 272 MobiDBLite consensus disorder prediction 1 86 - -
Tsu04g01101 272 MobiDBLite consensus disorder prediction 48 73 - -
Tsu04g01101 272 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 24 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01101 Tsu-Chr4 10691232 10696892 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01101 100 231 Calmodulin-binding Proteins AT3G25230 40.000 3.36e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01101 K24926 - gmx:100808386 382.104