Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01094 ATGGCTGAAGAGGAACCAAAGACTCTTAACTATATTCCAGAGGTTATATTGAAGAAGAGGAAAAACAGTGAAGCATGGGCGTTGAGAAAAAAGGAACAATTGCAGAAAAAAGATTTCCAGTTGAGGAAGTCCAAGGACTTTATTAAAAATCCTGAGGATTTCATTCTTGAATATCGCAATAGGGAGGTGGACCTCATTAGAATGAAAAGGAGGGTCAAGAGGAGACGGGGAGAAAAATCAATCCTATCCAACAAGCCCATATTAGTCATTCGTATACAGGGGAAACAAGACATGCATCCTACATCCAGAAAGCACTTATTCAGTTTGGGATTGAGAAGAATATTCAGTGCTGTCTTTGTGAAACCAACTGAAGGAGTGATGGCCAAGCTGGCGAGAGTTGAACCATATGTTACCTATGGATATCCAAATCTTAAAAACATAAAGGAGCTAATTTACAAGAAGGGACATGCAAAAATAGAGAGGCGAAAAGTTCCTTTGACAGATAATAACCTTATTGAGCAGGAATTAGGAAAGTTTGGTATTGTATGCATAGAAGACATGGTGCATCAAATTGAAAATGTTGGTCCACACTTTAATGAAGTTGTCAGATTTATGTGGCCCTTGGAACTGAACAAGCCAGCTGATGGATTGAAAGGATTGAAAAATCGGTTCAAGGATGGTGGAGATTCAGGGGACCGCGAGGATCTCATCAACGAGCTCATCAATAAAATGAATTAG 738 0.3943 MAEEEPKTLNYIPEVILKKRKNSEAWALRKKEQLQKKDFQLRKSKDFIKNPEDFILEYRNREVDLIRMKRRVKRRRGEKSILSNKPILVIRIQGKQDMHPTSRKHLFSLGLRRIFSAVFVKPTEGVMAKLARVEPYVTYGYPNLKNIKELIYKKGHAKIERRKVPLTDNNLIEQELGKFGIVCIEDMVHQIENVGPHFNEVVRFMWPLELNKPADGLKGLKNRFKDGGDSGDREDLINELINKMN 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01094 245 Pfam Ribosomal protein L30p/L7e 87 137 IPR016082 -
Tsu04g01094 245 PANTHER 60S RIBOSOMAL PROTEIN L7-1 3 245 - -
Tsu04g01094 245 PANTHER 60S RIBOSOMAL PROTEIN L7 3 245 IPR039699 -
Tsu04g01094 245 Pfam Ribosomal L30 N-terminal domain 12 75 IPR012988 -
Tsu04g01094 245 TIGRFAM uL30_euk: 60S ribosomal protein uL30 13 245 IPR005998 GO:0000463|GO:0003735|GO:0022625
Tsu04g01094 245 CDD Ribosomal_L7_archeal_euk 87 245 IPR035808 -
Tsu04g01094 245 Gene3D - 87 245 IPR036919 -
Tsu04g01094 245 SUPERFAMILY Ribosomal protein L30p/L7e 88 245 IPR036919 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01094 Tsu-Chr4 10668709 10672781 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01094 1 245 Cytoplasmic Ribosomal Protein Gene Family AT1G80750 53.846 2.37e-84 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01094 K02937 - gmx:100306107 362.844