Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01088 ATGATGGATGTCGATGAACAACAAATTATACCCGATCCACTTCCGTTTGCTAGAAgCTATCAGCTTGAAGCACTGGAGCAAGCAGTGCGGGAAAATACAATAGTGTATCTGGAGACCGGATCTGGAAAGACGTTGATAGCTACCATGCTTCTCCGAAGCTACACTTGTCACCTCCGGAAGCCTTCTCCATATATTGCTGTTTTTTTAGTTCCGAAAGTTGTGTTGATTTATCAGCAAGCTAAAGCCTTGAGAAACCAGACGGATTTAAACATTGGAATTTATTGCGGAAACATGGGTCGTGACTATTGGGACGGAGATATGTGGAAAGAAGAGATGGAGAAACATGAGGTGCTTGTCATGACTCCTGCAATATTGCTTTCTTGCTTGAGACATAGCTTTATCAAACTGAATATGATAAAGGTTTTAATAATGGATGAATGCCATCATGTTACTGGTAATCACCCATATGCTTGTATCATGAATGAATTTTATAATCGTGAATTAAGATCTGGTAACACCGAGCTTCCTCGAATATTTGGGATGACCGCATCCCCAATTAAGTCGAAAGCTGCGAATTCTGAGTCATCCTTGTCAGAAAAAGTTCGGGAACTAATGACTCTAATGAATTCAAaggttGTTTATACGCGTCTAAGTGATGTTATCGTCTCAGAGTCTACCCTAAAATTCCGGTATTATACGAGCAATGCAACTTCTGATGCACTATTCGAAGAATTATCCAAAAAACTCAACGCGTTAAAACAGCAGCACGAGCTTTCTGGGACAAGTTCAGATTTGACAGCTGATTCTGtcaaatttataaacaaaaaaatgtcaaagaTTTTGGAATCATCAATATCTTGCTTGGAACATCTTGGCGTTTGGTTTGCTTTGAAGGCTATGGAGTCGGCATTATCTTCCGTTGAAGCCTTCTCACGGGGTAACTCGGGGTATCACATTGTGAAAGAATTTATTTCGGCTGCTACCATGACACTGCAAACTTACGTACCATCTGATCCTCAATGGACTATTGGCGAAAATATGAATTCCGACGTGGAAAAGGGGCTATTGACTTCCAAAGTGTCCTGTCTTATTGACTGTCTACTCGAGTACCGTGGTGTTACCGAAATGAGATGTATAGTTTTTGTGGAAAGGGTTATTGCAGCTAGGGTTCTTCCGACTCTATTGAACACTTTGCTTCCGAAATACAATAGCTGGAAGGTTAGATATATTACTGGAAAGCATAATGAATTGAAAAGTCAATCTGCGAAAATTCAAGATGAAATTGTGGAAGAATTTCGCAAGGGATCGGTGAACGTCATTGTTGCGACATCAGTTCTCGAAGAGGGTTTAGATGTTCAAAATTGTAATTTGGTTATTAGATTTGACCTACCTCGAAATGTGTGCAGTTTTGTACAGTCTCGAGGACGTGCTAGAATGCAAAATTCAGATTACATATTGATGTTAGAGAGCGGCGATTTTGCTGCACATTCTCGAATAGAAAAATACATTGCTAGTGAGGAAATGATGAGGAAGGAGTCTTTGCATTATTCTTCCCTTCCATGTGAGAGTCCTGAAAATGAACGGTTTGATGAGCAATCTTATCGGGTTGCTAGCACTGGAGCTGTTGTTAGTCTTAGTTCGAGCATTCATTTGATACACTTATATTGTGGACGGCTCCCTTCAGATGGGTACTTTAAACCAAATCCGAGATGGGATAAAGAAGAAGGGATATTGTATCTTCCTAAGAGCTGTCCTATAGAGGCTATTCATGTACAAGGTGACCGAAAGCTCTTAAATATTGCATGCCTTGAAGCATGCAAACAACTTCATAAGATTGGAGCGTTGACGGATAATCTCGTTCCTTCTATTCTCGTTGAAGAAGCAGAGGTGGAGGAATCTGGGAATGAACCGTATGATGAAGAACAACTAAGTTATGTACCACCTGAATTGGTCAATCATGTGTCAAACAATAGTAACACAAATTACTATTGTTATTTGATGGAGCTAAAACAAGATTTTAGCTACGATATCACTGTGCAAGACATCTTTCTTGCAACTAGAGTCAAGCTTGACTCTGAAATCGGACGCATGGAATTCGATATGTGTTTCGACAGAGGTAACTTGCATGTAAACTTCAAATACAAAGGAATCATTAACCTCTCACAAGATCAGgtTCTTTTGTGTAAAAAATTCCAAGTTAATGTCCTTGGAATTCTTATGAATTCTAAAAAGCCTAAGGAATCTGATCTAGGCCAATGTTGTTTGGAAGATGATCTTCAAATGGATTATCTTCTACTTCCATCTATTGTAATAGAAGATAAACTAGTTGTTGATTGGTCAACAATTAGTTCTATAAATCCATATAACTTCTGGTGTCTGCACAACGAAACCAGAATACTCACAACGGATACTTTGGTTTGCCATTGCAAATTACAGAATGCTTTGATTCGTACGCCACATAATGGTTGCACTTACATCACCACTGATATATTGGATTTGGATGGAAACTCGCCTCTAGAAGTAGGCAATGGTCACAGTAGTACGTATAAGAAGTACTATGAAAAAAAGTATGGCGTTCAATTATATTATGAACATCAACGCCTACTTAAAGCAAGACAAGTTTTTCCGGTAAAAAATTACTGTCATGGACGCAAACAATCGAAAGACACAGatgTGAGCAAGAACTTTGTGGAATTACCTCCTGAACTATGCACTATAATCATGTCTCCAATTTCTGTTAGGACGATTTATACTTTTTCGCTTATTCCATCTATCATGCATCGAGTTGAGTCATTGCTTGTAGCTTTCAACTTCATAAAGATGCATTTGCTTCATTGTCCAGAAAACAGGATTGAAATATTCAAGGTCTTGGAAGCATTGACTGCAAAGTCGTGCAACGAGACCTTCCACTATGAGTCGTTAGAAACCCTTGGAGACTCGTTTCTAAAATATGCTGTTAGTCAACAGCTTTTCAGTACGTATCAGAATCAGCACGAGGGTATTCTTAGCGTGAAGAGGGAGAAGATCATTTCTAATGCTTCCCTTTGTAAGTTCGGTTGCAGTTCTGGACTTCTGGGCTTCATACGGACTGAGTCGTTTGATCCTAAGAAATGGATCATTCCTGGAGCTAAATCAAGGGGTTTTAAATTAGAAGTGATGTCGAACAAGGGAGTACAAGTTTACACCCGTGGAACTCGAAAACTGAAAAGAAAAGTTGTTGCTGATGTGGTTGAAGCATTAATCGGTGCCTTCCTCAGCACTGGTGGCGAGATGGCTGCATTGCTGTTTATGGATTGGGTTGGAATCAAAGTTAATTTTAACATTTCACCGTATGAGAGGATATGCAGTGCCAGTAGTCCTGAGAATGTTCTTAATGTCGCTTTCTTAGAATCCATATTGAAGTACTCCTTTGCGGATCGTTCTCTATTAGTAGAAGCTATGACCCATGGTTCATACATGCTGCCCGACGTTCCTAGATGCTATCAGCGATTGGAATATTTAGGGGACGCGGTGTTGGATTATCTAATCACATTGCATTTGTACAAAGAATACCCCGGCATGACATCCGGGATGTTAACAGACATGAGGGCAGCCTCTGTGAACAATGACTGTTATGCGAAGTCTGCCATAAGGGTCCAACTGCATAAGCATGTACTCCATACCTCTCCGGAGTTACATAAACATATTGCAGATACACTTGTTAGATACAGCGAACTATCTTCATCATCAACTTTTGGATGGGAGTGCGAGGCATCATTCCCCAAGGTACTTGGCGACATCATAGAGTCTCTGGCTGGTGCTATACTCGTAGATTCAGGATACAACAAGGAAGTTGTGTGGAAAAGCATAAGGCCTCTTTTGGAACCACTTGTGACACCTGAGACATTAACGCTCCACCCCGTTCGAGAATTAATCGAACTGTGCCAAACAAGGAATTATTTCATGGAGAATATATTGTCCTGCAACGATGGCGTTACTACTTGTAGAATCAATATAGATGTGAATGGCGTAATGCATCAATATGAGTATAAAGGTTCTACTGATAGAAAAACCGCCAAAAGACTAGCCTGCAAGACAGCTTTGAATTGCTTGAAGTTGAAGAAAACATCAAACATGTTAGCATAA 4125 0.3966 MMDVDEQQIIPDPLPFARSYQLEALEQAVRENTIVYLETGSGKTLIATMLLRSYTCHLRKPSPYIAVFLVPKVVLIYQQAKALRNQTDLNIGIYCGNMGRDYWDGDMWKEEMEKHEVLVMTPAILLSCLRHSFIKLNMIKVLIMDECHHVTGNHPYACIMNEFYNRELRSGNTELPRIFGMTASPIKSKAANSESSLSEKVRELMTLMNSKVVYTRLSDVIVSESTLKFRYYTSNATSDALFEELSKKLNALKQQHELSGTSSDLTADSVKFINKKMSKILESSISCLEHLGVWFALKAMESALSSVEAFSRGNSGYHIVKEFISAATMTLQTYVPSDPQWTIGENMNSDVEKGLLTSKVSCLIDCLLEYRGVTEMRCIVFVERVIAARVLPTLLNTLLPKYNSWKVRYITGKHNELKSQSAKIQDEIVEEFRKGSVNVIVATSVLEEGLDVQNCNLVIRFDLPRNVCSFVQSRGRARMQNSDYILMLESGDFAAHSRIEKYIASEEMMRKESLHYSSLPCESPENERFDEQSYRVASTGAVVSLSSSIHLIHLYCGRLPSDGYFKPNPRWDKEEGILYLPKSCPIEAIHVQGDRKLLNIACLEACKQLHKIGALTDNLVPSILVEEAEVEESGNEPYDEEQLSYVPPELVNHVSNNSNTNYYCYLMELKQDFSYDITVQDIFLATRVKLDSEIGRMEFDMCFDRGNLHVNFKYKGIINLSQDQVLLCKKFQVNVLGILMNSKKPKESDLGQCCLEDDLQMDYLLLPSIVIEDKLVVDWSTISSINPYNFWCLHNETRILTTDTLVCHCKLQNALIRTPHNGCTYITTDILDLDGNSPLEVGNGHSSTYKKYYEKKYGVQLYYEHQRLLKARQVFPVKNYCHGRKQSKDTDVSKNFVELPPELCTIIMSPISVRTIYTFSLIPSIMHRVESLLVAFNFIKMHLLHCPENRIEIFKVLEALTAKSCNETFHYESLETLGDSFLKYAVSQQLFSTYQNQHEGILSVKREKIISNASLCKFGCSSGLLGFIRTESFDPKKWIIPGAKSRGFKLEVMSNKGVQVYTRGTRKLKRKVVADVVEALIGAFLSTGGEMAALLFMDWVGIKVNFNISPYERICSASSPENVLNVAFLESILKYSFADRSLLVEAMTHGSYMLPDVPRCYQRLEYLGDAVLDYLITLHLYKEYPGMTSGMLTDMRAASVNNDCYAKSAIRVQLHKHVLHTSPELHKHIADTLVRYSELSSSSTFGWECEASFPKVLGDIIESLAGAILVDSGYNKEVVWKSIRPLLEPLVTPETLTLHPVRELIELCQTRNYFMENILSCNDGVTTCRINIDVNGVMHQYEYKGSTDRKTAKRLACKTALNCLKLKKTSNMLA 1374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01088 1374 SMART PAZ_2_a_3 792 934 IPR003100 GO:0005515
Tsu04g01088 1374 Pfam Dicer dimerisation domain 548 621 - -
Tsu04g01088 1374 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 3 14 1367 - -
Tsu04g01088 1374 SUPERFAMILY PAZ domain 801 907 IPR036085 GO:0005515
Tsu04g01088 1374 SUPERFAMILY dsRNA-binding domain-like 1255 1368 - -
Tsu04g01088 1374 Gene3D - 350 515 IPR027417 -
Tsu04g01088 1374 ProSiteProfiles PAZ domain profile. 810 908 IPR003100 GO:0005515
Tsu04g01088 1374 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 24 203 IPR014001 -
Tsu04g01088 1374 Gene3D paz domain 796 913 - -
Tsu04g01088 1374 Gene3D Dicer dimerisation domain 543 630 IPR038248 -
Tsu04g01088 1374 Gene3D Ribonuclease III domain 1123 1297 IPR036389 GO:0004525|GO:0006396
Tsu04g01088 1374 Gene3D - 16 255 IPR027417 -
Tsu04g01088 1374 CDD DEXHc_dicer 17 212 - -
Tsu04g01088 1374 CDD RIBOc 957 1099 IPR000999 GO:0004525|GO:0006396
Tsu04g01088 1374 Pfam Ribonuclease III domain 1162 1273 IPR000999 GO:0004525|GO:0006396
Tsu04g01088 1374 Pfam Ribonuclease III domain 972 1089 IPR000999 GO:0004525|GO:0006396
Tsu04g01088 1374 Pfam DEAD/DEAH box helicase 19 167 IPR011545 GO:0003676|GO:0005524
Tsu04g01088 1374 SUPERFAMILY RNase III domain-like 1126 1294 IPR036389 GO:0004525|GO:0006396
Tsu04g01088 1374 PANTHER DICER-RELATED 14 1367 - -
Tsu04g01088 1374 CDD RIBOc 1141 1296 IPR000999 GO:0004525|GO:0006396
Tsu04g01088 1374 Pfam PAZ domain 807 930 IPR003100 GO:0005515
Tsu04g01088 1374 SMART ultradead3 13 214 IPR014001 -
Tsu04g01088 1374 ProSitePatterns Ribonuclease III family signature. 1162 1170 IPR000999 GO:0004525|GO:0006396
Tsu04g01088 1374 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 499 IPR027417 -
Tsu04g01088 1374 SUPERFAMILY RNase III domain-like 955 1107 IPR036389 GO:0004525|GO:0006396
Tsu04g01088 1374 Pfam Helicase conserved C-terminal domain 359 478 IPR001650 -
Tsu04g01088 1374 ProSiteProfiles Ribonuclease III family domain profile. 1126 1273 IPR000999 GO:0004525|GO:0006396
Tsu04g01088 1374 SMART helicmild6 389 480 IPR001650 -
Tsu04g01088 1374 Gene3D Ribonuclease III domain 952 1099 IPR036389 GO:0004525|GO:0006396
Tsu04g01088 1374 SMART riboneu5 1141 1296 IPR000999 GO:0004525|GO:0006396
Tsu04g01088 1374 SMART riboneu5 954 1109 IPR000999 GO:0004525|GO:0006396
Tsu04g01088 1374 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 367 527 IPR001650 -
Tsu04g01088 1374 ProSiteProfiles Ribonuclease III family domain profile. 958 1089 IPR000999 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01088 Tsu-Chr4 10567142 10574500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01088 410 526 Eukaryotic Initiation Factors Gene Family AT1G72730 29.412 7.39e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01088 K11592 - gmx:100792448 1752.26