Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu04g01080 | atggagaacACCGCATTAAAAAATGGAAACTTTGATGacgatgaagatgaagaagttcCAGATTCCTTTTGTTGTTGCGTTTGTCTGGATCTATTATACAAGCCGATTGTGCTATCTTGTGGTCACATTTGCTGTTTCTGGTGTGTCTATAAATCAATGAATTGTCTGCGCGAGTCTCAGTGTCCAACATGTAGGCATCAATACTATCACTTCCCAACAGTCTGCCAAACGCTTCATTTTTTGCTTCTGAAGATTTACCCCGTTGCTTACAATAGAAGGATCAATCAAACTCTTGAGGAAGAGAAGAAATCAGGCTTCTACTCCCCTCAATTTGATCCTGACACATGTGAGTCACAAGCTAAATTTGGTCATTCATGTAGCCCTTCTTCCTCCTCTATGGTAAATTCGGTTTTCACCTCCTGCAATGTCGGAACTTTCGAATGTACGGAGCAACCAGGGTCCACTGCTCACGAAGGAGAACCTGAATTTACTGGGACTCCTGTTGAAGAAAAAACATTGCCTCAAGGAGAACCTGAAATTACTGGGACTCCTATTGAAGAAAAAGCATTGCCTCAAGATAATCTTGAGATACAACATAAACTATCAGTTGCAGACGTGATGTGTACAATGTGCAAGCAACTACTTTTTCATCCTGTAGTTCTTAATTGTGGACACGTTTACTGTGAAACTTGTGTCTACAAGTTAGCTGATGAGATGCTTAGATGCCAAGTTTGTCAAAGTCCACATCCAAGAGGATTTCCAAAAGTGTGTTTGGAGTTTGATCACTTTTTGGAGGAACAATTTCCTGAAGAATATGCACGGCGAAGAGATGCTATTGAACTAAAGGACATCAAAGTCAAACTTGAGACCCCTCCTTCTAgTTCATCGGATAATGGTAAAAAAGGACATAGCGAATGGTCGTCTGATCCTGACTCGAAAGTTCACGTTGGAGTTGGGTGTGACTTTTGTGGGATGTTTCCAATCATTGGAGATAGATATAGGTGCAATGACTGCAAGGAAAAAATGGGTTTTGATCTTTGTGCCAATTGCTACGACACACGCTCCAAACTTCCAGGCCGATTTAATCAACAACACACCTCAGATCACACTTTCAAGCTTGTACAACCCAACGCTTTTCATAACATAATGTTGAGACTGGTCACCGGACAGTTAGGACACAATTCTTTTGACCTCGAGACTTTAGGAAACCTAGAATTTACAGCTGAAGCCTCTGAGTTGTTCGATGATGGCGAAGATAACCAGAATGACCCTGAAGCtacaaattga | 1287 | 0.4017 | MENTALKNGNFDDDEDEEVPDSFCCCVCLDLLYKPIVLSCGHICCFWCVYKSMNCLRESQCPTCRHQYYHFPTVCQTLHFLLLKIYPVAYNRRINQTLEEEKKSGFYSPQFDPDTCESQAKFGHSCSPSSSSMVNSVFTSCNVGTFECTEQPGSTAHEGEPEFTGTPVEEKTLPQGEPEITGTPIEEKALPQDNLEIQHKLSVADVMCTMCKQLLFHPVVLNCGHVYCETCVYKLADEMLRCQVCQSPHPRGFPKVCLEFDHFLEEQFPEEYARRRDAIELKDIKVKLETPPSSSSDNGKKGHSEWSSDPDSKVHVGVGCDFCGMFPIIGDRYRCNDCKEKMGFDLCANCYDTRSKLPGRFNQQHTSDHTFKLVQPNAFHNIMLRLVTGQLGHNSFDLETLGNLEFTAEASELFDDGEDNQNDPEATN | 428 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu04g01080 | 428 | SMART | zz_5 | 314 | 363 | IPR000433 | GO:0008270 | |
| Tsu04g01080 | 428 | SUPERFAMILY | RING/U-box | 203 | 249 | - | - | |
| Tsu04g01080 | 428 | SUPERFAMILY | RING/U-box | 13 | 70 | - | - | |
| Tsu04g01080 | 428 | SMART | ring_2 | 25 | 64 | IPR001841 | - | |
| Tsu04g01080 | 428 | SMART | ring_2 | 208 | 245 | IPR001841 | - | |
| Tsu04g01080 | 428 | MobiDBLite | consensus disorder prediction | 152 | 183 | - | - | |
| Tsu04g01080 | 428 | ProSiteProfiles | Zinc finger RING-type profile. | 208 | 246 | IPR001841 | - | |
| Tsu04g01080 | 428 | ProSiteProfiles | Zinc finger ZZ-type profile. | 315 | 379 | IPR000433 | GO:0008270 | |
| Tsu04g01080 | 428 | Gene3D | - | 308 | 374 | IPR043145 | - | |
| Tsu04g01080 | 428 | CDD | RING-HC | 25 | 64 | - | - | |
| Tsu04g01080 | 428 | PANTHER | UNCHARACTERIZED | 12 | 422 | - | - | |
| Tsu04g01080 | 428 | MobiDBLite | consensus disorder prediction | 289 | 311 | - | - | |
| Tsu04g01080 | 428 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRT1-LIKE | 12 | 422 | - | - | |
| Tsu04g01080 | 428 | ProSitePatterns | Zinc finger RING-type signature. | 223 | 232 | IPR017907 | - | |
| Tsu04g01080 | 428 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 111 | IPR013083 | - | |
| Tsu04g01080 | 428 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 195 | 291 | IPR013083 | - | |
| Tsu04g01080 | 428 | Pfam | Zinc finger, ZZ type | 315 | 355 | IPR000433 | GO:0008270 | |
| Tsu04g01080 | 428 | ProSiteProfiles | Zinc finger RING-type profile. | 25 | 65 | IPR001841 | - | |
| Tsu04g01080 | 428 | SUPERFAMILY | RING/U-box | 312 | 374 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu04g01080 | Tsu-Chr4 | 10502790 | 10509476 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu04g01080 | 10 | 65 | C3H Transcription Factor Family | AT1G74990 | 36.842 | 6.28e-07 | 47.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu04g01080 | - | - | gmx:100782681 | 662.529 |