Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01078 ATGAAGCCAACTTTGGGTCAAGCTCAAAGTAATTGGGAAGCTGATAAAATGCTTGATGTTTATATTCATGATTATTTTCTGAAAAGAAAGTTGAACGCCACTGCGAAAACTTTTATGACAGAAGCAAAAGTTTCGTCGGATCCTGTAGcAATTGATGCACCTGGAGGATTTCTTTTTGAGTGGTGGTCTGTCTTTTGGGATATATTCATCTCGAGAACAAATGAGAAACATTCTGAGGCTGCTGCCTCGTACATTGAGACCCAGCAAACGAAGGCCAGGGAACAACTTCAAATGCAGCAAATGCAACTAATGCAGCAGCGCAATGTCCAGTTACAGCGAAGAGATCCTAATCATCCTGGACTGGGTGGACTGGGTGGTTCCTTGAATGCCATGAACTCTGAAGGTATGTTGGGGCAGCCACCAGCAAGTGTGTTGGCTATGAAAATGTATGAAGAGCGAATGAAACACCCTCATTCAATGGATTCAGAAGCATCTCCAAATCTTATCGATGCTAATAGGATGGCTCTTCTCAAATCAGCAACAAGTCATCAAGGTCAGCTGGTTCATGGTAATTCAGGGAATATGTCCAATGCATTGCAGCAACTGCAAGCACGGTCTACTTTAACCACTGACATCAAAGGAGATGTTAACATTGGCGCTGGTCCAAAGAATTTGCCTTTGGATTCATCAGTTTATCGACAAGCAATTTTACAATCAAAATCTGGGTTAGGAAGTGCAGGATTAAATCAAGGAGTTACAAGTCTTCCATTGAAGGGATGGCCTCTAACTGGAATTGAACAACTAAGGCCTGGTTTGGGTGTACAAGTTCAGAAGCCTAATTTAACACCACAAAACCAATATCTTTTGGCATCACAACAACAACAGGTCTTGGCACAGGCTCAGGCACAAAACAACCTTGGAAATTCTAATTTTGGTGATATGGATCCGCGTAGACTTTCTGGTCTTCCCCGAGGTAGCTTAAATGTGAAGGATGGTCAATCTAACAGGAACGATGGAGCCATTTCCTCCCAAATGCAATCAGGTTCACCTAAGATGAAGATGACCCAGTCACAACAATCGTTATCTCAGCAGCAAGAGCAATTGCAGCAGAATCAACTTCAGCAGAGTAACAGAAAACGAAAGCAAGCTAATTCTTCTGGAGCTGCCAATAGCACTGGTACTGGAAACACAGCTGTTCCTTCACCTACTTCACCGCCATCGACACACACACCCGGTGATGGATTAAATACAGCTAGCAGCATGCAAAATGTTAACAGTGTGCCAAAGAGCATGATGATGTATGGTACAGAGGCAACAGGAGGCCTGGGATCATCTTCAAATTTACTTGACGATATGGAACAATTTGGAGATGTTGGTGCTTTAGATGATAACGTGGAATCCTTTCTATCAAATGACGCAGGAGATGGTGCTAATCTCTATGGAACAATAAAACAAAGTCCAGCTGAGCAACCAAAAGAGCCTCAGAGAACTTTCACCTTTGCTGAATTTAGTTGCATAAGAACAAGGAACAATGTTACTTCCTGTCACTTCTCTTCAGATGGAAAGTTGCTTGCCAGTGCCGGGGAGGATAAGAAGGTTGTGCTGTGGAATATGGACACTTTACGGACAGACACCACTCCTGAAGAACACAAATTAGTTATTACAGATGTTCGTTTTAGACCAAATTCATCTCAGTTGGCGACATCCTCGTGTGACAAATCTGTGCGGTTATGGGATGCAGCCAATCCAACCTATTGTGTTCAAGAATATAGTGGACACAGTTCAGCTATCATGTCCCTTGATTTCCACCCTAAGAAGACTGATATTTTCTGCTTTTGTGATAGCGAAAATGAGATTCGGTATTATCACATTGCTTCATCCTCTTGTACCCGTGTATCTAAGGGAGGTAGTGCTAAGGTGAGGTTTCAGCCTAGATCGGGACAGTTTCTTGCAGCAGCTTCTGATAAAGTGGTGTCCATTTTTGATGTCGAAACTGACAGACAAATTTACTCACTCCAGGGTCATCCTGAACCAGTGAACTATATTTGCTGGGATAGTACCGGAGAGATGTTGGCATCTGTTAGTCCAAATTTGGTGAAGGTGTGGAATTTGACCTCAGGAGAATGCATTCAGGAGCTCACCTCCCCTGGGAACCAGTTTTATTCCAGTGTTTTTCATCCAAGCTATTCAACTTTATTAGTAGTTGGAGGGTTTTCGTCCATAGAGTTGTGGAACATGGCTGAGAACAAAAGCATGACAATTCCTGCACATGAGAATGTGATTTCTGCTTTGGCTGAGGCTTCTGTCACTGGAATGGTTGCCTCTGCGAGTCGTGACAACTCTGTAAAGTTGTGGAAATAA 2361 0.4299 MKPTLGQAQSNWEADKMLDVYIHDYFLKRKLNATAKTFMTEAKVSSDPVAIDAPGGFLFEWWSVFWDIFISRTNEKHSEAAASYIETQQTKAREQLQMQQMQLMQQRNVQLQRRDPNHPGLGGLGGSLNAMNSEGMLGQPPASVLAMKMYEERMKHPHSMDSEASPNLIDANRMALLKSATSHQGQLVHGNSGNMSNALQQLQARSTLTTDIKGDVNIGAGPKNLPLDSSVYRQAILQSKSGLGSAGLNQGVTSLPLKGWPLTGIEQLRPGLGVQVQKPNLTPQNQYLLASQQQQVLAQAQAQNNLGNSNFGDMDPRRLSGLPRGSLNVKDGQSNRNDGAISSQMQSGSPKMKMTQSQQSLSQQQEQLQQNQLQQSNRKRKQANSSGAANSTGTGNTAVPSPTSPPSTHTPGDGLNTASSMQNVNSVPKSMMMYGTEATGGLGSSSNLLDDMEQFGDVGALDDNVESFLSNDAGDGANLYGTIKQSPAEQPKEPQRTFTFAEFSCIRTRNNVTSCHFSSDGKLLASAGEDKKVVLWNMDTLRTDTTPEEHKLVITDVRFRPNSSQLATSSCDKSVRLWDAANPTYCVQEYSGHSSAIMSLDFHPKKTDIFCFCDSENEIRYYHIASSSCTRVSKGGSAKVRFQPRSGQFLAAASDKVVSIFDVETDRQIYSLQGHPEPVNYICWDSTGEMLASVSPNLVKVWNLTSGECIQELTSPGNQFYSSVFHPSYSTLLVVGGFSSIELWNMAENKSMTIPAHENVISALAEASVTGMVASASRDNSVKLWK 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01078 786 Pfam LisH 16 42 IPR006594 GO:0005515
Tsu04g01078 786 CDD WD40 509 786 - -
Tsu04g01078 786 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 9 786 IPR044716 GO:0003714
Tsu04g01078 786 Pfam WD domain, G-beta repeat 763 786 IPR001680 GO:0005515
Tsu04g01078 786 Pfam WD domain, G-beta repeat 668 703 IPR001680 GO:0005515
Tsu04g01078 786 Pfam WD domain, G-beta repeat 495 537 IPR001680 GO:0005515
Tsu04g01078 786 Pfam WD domain, G-beta repeat 547 579 IPR001680 GO:0005515
Tsu04g01078 786 ProSiteProfiles Trp-Asp (WD) repeats profile. 512 546 IPR001680 GO:0005515
Tsu04g01078 786 ProSitePatterns Trp-Asp (WD) repeats signature. 524 538 IPR019775 -
Tsu04g01078 786 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 9 786 - -
Tsu04g01078 786 SMART Lish 14 46 IPR006594 GO:0005515
Tsu04g01078 786 Coils Coil 354 374 - -
Tsu04g01078 786 ProSiteProfiles Trp-Asp (WD) repeats profile. 672 712 IPR001680 GO:0005515
Tsu04g01078 786 SMART WD40_4 706 745 IPR001680 GO:0005515
Tsu04g01078 786 SMART WD40_4 626 662 IPR001680 GO:0005515
Tsu04g01078 786 SMART WD40_4 583 623 IPR001680 GO:0005515
Tsu04g01078 786 SMART WD40_4 502 537 IPR001680 GO:0005515
Tsu04g01078 786 SMART WD40_4 540 579 IPR001680 GO:0005515
Tsu04g01078 786 SMART WD40_4 665 703 IPR001680 GO:0005515
Tsu04g01078 786 SMART WD40_4 747 786 IPR001680 GO:0005515
Tsu04g01078 786 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 547 579 - -
Tsu04g01078 786 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 754 786 - -
Tsu04g01078 786 Gene3D - 331 641 IPR015943 GO:0005515
Tsu04g01078 786 SUPERFAMILY WD40 repeat-like 507 786 IPR036322 GO:0005515
Tsu04g01078 786 ProSiteProfiles Trp-Asp (WD) repeats profile. 754 786 IPR001680 GO:0005515
Tsu04g01078 786 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
Tsu04g01078 786 MobiDBLite consensus disorder prediction 327 421 - -
Tsu04g01078 786 MobiDBLite consensus disorder prediction 307 421 - -
Tsu04g01078 786 Gene3D - 642 786 IPR015943 GO:0005515
Tsu04g01078 786 PRINTS G protein beta WD-40 repeat signature 524 538 IPR020472 -
Tsu04g01078 786 PRINTS G protein beta WD-40 repeat signature 566 580 IPR020472 -
Tsu04g01078 786 PRINTS G protein beta WD-40 repeat signature 773 786 IPR020472 -
Tsu04g01078 786 ProSiteProfiles Trp-Asp (WD) repeats profile. 547 579 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01078 Tsu-Chr4 10485601 10494301 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01078 585 785 Miscellaneous Gene Families AT5G08390 21.845 1.75e-09 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Tsu04g01078 WD40 5.5e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01078 - - gmx:100799686 1169.84