Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01073 ATGGATTTGTCATTCACACTATTTCTTCTAATATTCCCCTTTTTATTTcaatgttcatcttcttcatcatcatcttcattgaGAAAAGGTTCATCCCTCTCAGTGGAAGATCCAGAAGACAGAATCATTTCACCAAATGGCATTTTCACTGCTGGCTTTACAGCCATTGGTGAAAATGCTTATTCCTTTGCCATATGGTTCACAGAACAAAATTCTTTCAACAGCACAATCGTTTGGATGGCAAATCGCGATCAACCCGTTAACGGAAAACGATCAAAACTCACCCTTTTAAACACAGGAAACATTGTCTTGTTTGATGTTTCTTTAAGTAATGTTTGGTCTTCAAACACAGCATCATTGGAACCAATAGAGTTACATCTCAAAGATGACGGAAATCTTGTGTTGCGTGAGGTTCAAGGAACCAACATTTTGTGGCAGAGTTTTGATTCTCCAACAGATACTCTTCTTCCTGGTCAACCTCTTACAAGATATACAGAGCTTGTAGCTTCAAGAAGTGAGACTAACCATTCTACTGGCTTCTACAGGTTCTCCTTTGATGATTCAAATGTTCTTGTTCTTCGTTATGATGGCCCGGATATTTCTAGCTCTTATTGGCCAAAACCTTGGCTGCTAATTTCGCAAACCGGCAGGGCTAGTTTCAATGGTAGCAGAATTGCAATCTTGGACAATTTTGGTAACTTCCTTTCATCAGataatttaacttttataaCTTCTGATTCTGGAACAATTCTacaaagaagaatgaaaatgGATCCTGATGGTAATGTTAGAGTATATAGCAGAACTAATGTGTCACAAAATTGGTATGTTTCTTGGCAAGCAATTTATGGTGCTTGCATAGCTCATGGAATTTGTGGAGATAATAGTACATGTAGTTATAATCCTAAGCATGGAAGAAAATGTTCTTGTATTCCAGGTTATAGAGTCAAGAACCATAGTGATTGGTCTTATGGTTGCGAACCTATGTTTGATTTTACTTGCAATAGAAGCGAGTCTACTTTTTTAGCTATGGTAAATGTTGAGTTTTATGGTTATGACATTCACTATGTTGAAATTAGTAACTATAGTTCTTGTGAAATATTGTGCTTACAAGATTGTAATTGTAAAGGATTTCAGTACGGTTTTGGGCAGGTAAAAGGCTTTTATAAGTGTTTTACAAAAACACAATTGCGAAATGGAAGGCATTCGCCATTCTTTGTAGGAACAACATACTTGAGATTGCCTAAAGGTAATAACTTCTCTAAACAAGAAACTTCCACTCCGGGTGACCATGTTTGTCAAGTGAAACTTCAAAGAGTTTTCGTTAGTGCAAGTGAGAGCCATTTCGTGAAGTTTTTTCTATGGTTCGTCACTGCGATTGGAGCTTTCGGGATGGTCTGCATTTTCGTCATTTGGTGTTCCCTATTCAGGAccaagcaaaataataatgcaGACAACCAGGGCTACCATCTAGCGGAAATTGGGTTTAGAAAATTCAGTTACTTGGAGTTGAAGAAAGCAACAAAAGGGTTCAGTCAAGAGATCGGAAGAGGTGGAGGAGGTGTTGTATATAAAGGTATATTATCAGATGAAAGACATGCTGCAATAAAGAGACTTTACAATGCTCAGCAAGGAGAAGGCGAATTTCGCGCTGAAGTTGGCATCATTGGCAGGCTTAATCACATGAATTTGATTGAAATGTGGGGATATTGTGCTGAGGGAAAATATAGACTATTGGTTTACGAGTACATGGAAAATGGTTCTTTAGCTGAAAATCTATCATCTAATAAACTTGATTGGAGTAAAAGGTACAAAATTGCTTTAGCAATAGCAAGAGTTTTAGCATATCTACATGAAGAATGTTTGGAGTGGATTTTACATTGTGATATAAAGCCACAAAACATACTTCTTGATTCTAACTTTCAACCCAAGTTAGCTGATTTTGGATTGTCTAAACTCCAAAACAGAAACAACCTCAACAATTCAATTGTGTCTATGATTAGAGGAACAAGAGGGTATATGGCACCTGAATGGATTTTCAACTTGCCAATAACATCTAAGGTTGATGTTTATAGCTATGGAATTGTTGTGTTGGAAATGATAACAGGAAAAAGTCCAACTACAGGTTTCAAAATTGTTACTGGAGAAGAGGAAAGTGATGGGAGGTTGATTACATGggtgagagaaaaaaaaggcaATAGCATATCTTGGTtggaggaaattgttgatcCTAATATTGGGGTAAATTATGATAAAAGTAAGATGGAGATTTTACCTAAAGTTGCTTTGGATTGTGTTGTGGATGAAAGAGATTCAAGGCCTACCATGAGTAGAGTAGTTGAGATGCTTCAATACCATGGAAGTGATGTTTAG 2373 0.3527 MDLSFTLFLLIFPFLFQCSSSSSSSSLRKGSSLSVEDPEDRIISPNGIFTAGFTAIGENAYSFAIWFTEQNSFNSTIVWMANRDQPVNGKRSKLTLLNTGNIVLFDVSLSNVWSSNTASLEPIELHLKDDGNLVLREVQGTNILWQSFDSPTDTLLPGQPLTRYTELVASRSETNHSTGFYRFSFDDSNVLVLRYDGPDISSSYWPKPWLLISQTGRASFNGSRIAILDNFGNFLSSDNLTFITSDSGTILQRRMKMDPDGNVRVYSRTNVSQNWYVSWQAIYGACIAHGICGDNSTCSYNPKHGRKCSCIPGYRVKNHSDWSYGCEPMFDFTCNRSESTFLAMVNVEFYGYDIHYVEISNYSSCEILCLQDCNCKGFQYGFGQVKGFYKCFTKTQLRNGRHSPFFVGTTYLRLPKGNNFSKQETSTPGDHVCQVKLQRVFVSASESHFVKFFLWFVTAIGAFGMVCIFVIWCSLFRTKQNNNADNQGYHLAEIGFRKFSYLELKKATKGFSQEIGRGGGGVVYKGILSDERHAAIKRLYNAQQGEGEFRAEVGIIGRLNHMNLIEMWGYCAEGKYRLLVYEYMENGSLAENLSSNKLDWSKRYKIALAIARVLAYLHEECLEWILHCDIKPQNILLDSNFQPKLADFGLSKLQNRNNLNNSIVSMIRGTRGYMAPEWIFNLPITSKVDVYSYGIVVLEMITGKSPTTGFKIVTGEEESDGRLITWVREKKGNSISWLEEIVDPNIGVNYDKSKMEILPKVALDCVVDERDSRPTMSRVVEMLQYHGSDV 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01073 790 CDD STKc_IRAK 515 784 - -
Tsu04g01073 790 PIRSF SRK 1 789 IPR024171 GO:0004674
Tsu04g01073 790 Gene3D Phosphorylase Kinase; domain 1 473 583 - -
Tsu04g01073 790 SMART blect_4 32 151 IPR001480 -
Tsu04g01073 790 Pfam S-locus glycoprotein domain 238 317 IPR000858 GO:0048544
Tsu04g01073 790 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 206 IPR036426 -
Tsu04g01073 790 ProSitePatterns Protein kinases ATP-binding region signature. 515 537 IPR017441 GO:0005524
Tsu04g01073 790 ProSiteProfiles Bulb-type lectin domain profile. 18 148 IPR001480 -
Tsu04g01073 790 Gene3D Hepatocyte Growth Factor 342 409 - -
Tsu04g01073 790 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672|GO:0006468
Tsu04g01073 790 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 3 790 - -
Tsu04g01073 790 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 3 790 - -
Tsu04g01073 790 ProSiteProfiles PAN/Apple domain profile. 334 410 IPR003609 -
Tsu04g01073 790 CDD B_lectin 44 151 IPR001480 -
Tsu04g01073 790 SUPERFAMILY Protein kinase-like (PK-like) 485 784 IPR011009 -
Tsu04g01073 790 Gene3D Transferase(Phosphotransferase) domain 1 584 789 - -
Tsu04g01073 790 ProSiteProfiles Protein kinase domain profile. 509 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01073 790 Pfam D-mannose binding lectin 76 163 IPR001480 -
Tsu04g01073 790 Pfam Protein kinase domain 512 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01073 790 SMART serkin_6 509 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01073 790 Gene3D - 151 284 - -
Tsu04g01073 790 CDD PAN_AP_plant 333 415 - -
Tsu04g01073 790 Gene3D - 19 150 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01073 Tsu-Chr4 10416717 10419089 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01073 499 783 Trihelix Transcription Factor Family AT5G38560 42.321 3.76e-67 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Tsu04g01073 Pkinase 4.1e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01073 - - gmx:100783758 1130.55