Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01072 ATGGATTTGTCATTCACACTCTTTCTTCTAGTATTATTAGCCTTTTCATTCcaatgttcatcttcttcatcatcatcacttaCAAAAGGTTCATCCCTTTCAGTAGAAAATCCAGAAGATAAAATCATTTCACAAAATGGCATTTTCTCTGCTGGATTTATTTCCATTGGTGAAAATGCATATTCCTTTGCCATATGGTTCAATGAACCAAATTCCTTTAACCACAAAAACACAATCGTTTGGATGGTGAATCGGGACCAACCCGTTAACGGAAAACGATCAAAACTTACCCTTTTAAACACAGGAAACATTGTCTTGCTTGATGTTTCTTTAAACAATGTTTGGTCTTCAAACACAGCATCACTGGAACCATTAGATTTGCATCTCAAAAATGATGGAAATCTTGTGTTGCGTGAGCTTCAAGGAACTAAAATTTTGTGGCAGAGTTTTGATTCTCCAACAGATACTCTTGTTCCTGGTCAACCCCTTACAAGATATACAAAGCTTGTAGCATCAAGAAGTGAGAATAATCATTCTTCTGGCTTCTACCAGTTCTTCTTTGACGATGAAAACATACTCGGTCTTCATTACAATGGTCGCGATGTTTCTAGCTCTTATTGGCCAAAACCTTGGCTTCTAAGTTGGGATGTTGGCAGAACTAATTTCAATAGTAGCAGAATTGCAGTATTGGATTCTTTTGGTGAGTTCTATTCATCAGataattttacttttactaCTTCTGATTATGGATCTGTTATGCAAAGAATAATGAAATTGGATTCTGATGGTGTTGTGAGGGTTTATAGCAGAATTAATAGTTCAATGAATTGGTATGTTTCATGGCTAGCCTTTTCTGGTACTTGCACAGTTCATGGAGTTTGTGGAGCTAATAGTACTTGTAGTTATAGTCCTAAACTTGGAAGAAAGTGCTCTTGTATTCCAGGGTATAGAATGAAGAATCCTAATGATTGGTCTTATGGTTGTGAGCCTATGTTTGATTTCACATGCAACAAAAGTGAGTCAACCTTTTTAGAGATGAAAAATGTTGAGTTTTATGGATATGACTTTcattatattgaaatttgtaaCTTTAGTACTTGTGTGGATTTATGCTTACAAGATTGTAATTGTAAAGCATTTCAATTCTCATATTGGGAGAGACATGGCTTCTATAGATGTTTTACAAAAACACAATTGCAAAATGGAAGGTATTATCCCATTTTCGAAGGATCTACCTATTTGAGATTGCCTAAAGGTAATACCTTTTCTTTAAAACAAACTTCCAATCCAAGTAACAATGTTTGCTCAGAAAAACTTCAACGAGTTTACGTCAACGAAGGTGAGAACCATTTTGTAAAGTTTTTTCTATGGTTTGCCACCGCGATTGGAGCTTTTCAAACGGTCAGCATTTTCATCATTTGGTGTTCCTTATTTAGGACGAACCAAAAGACTTTTGCAGACCAACAGGGCTACCATCTAGCGGATATTGGGTTTAGAAAATTCAGTTACTTTGAGCTAAAGAAAGCAACAAAAGGGTTCAGTCAAGAGATCGGAAGAGGCGGAGGAGGTGTTGTATACAAAGGCCTATTATCTGATGATAGACATGCTGCAATAAAGAGACTTTACAATGCTCAACAAGGAGAAGGCGAGTTTCTTGCCGAAGTAGGCATCATTGGAAGGCTTAATCACATGAATTTGATTGAAATGTGGGGATATTGTGCCGAGGGAAAATATCGATTATTGGTTTATGAGTACATGGAAAATGGTTCTTTAGCTGAAAATCTATCATCTAATAAACTTGATTGGAGTAAAAGGTACAAAATTGCTTTAGCAATAGCAAGAGTTTTAGCATATCTACATGAAGAATGTTTGGAGTGGATTTTACATTGTGATATAAAGCCACAAAACATACTTCTTGATTCTAACTTTCAACCCAAGTTAGCTGATTTTGGATTGTCTAAACTCCAAAACAGAAACAACCTCAACAATTCAATTGTGTCTATGATTAGAGGAACAAGAGGGTATATGGCACCAGAATGGATTTTCAACTTGCCAATAACATCTAAGGTTGATGTTTATAGCTATGGAATTGTTGTGTTGGAAATGATAACAGGAAAAAGTCCAACTACAGGTTTCAAAATTGTTAATGGAGAAGAGATAAGTGATGGAAGATTGGTTACATGGGTGAGAGAAAAAAGAGGTAGTAGCATATCTTGGTtggaggaaattgttgatcCTAATATTGGATTAAATTATGATAAAAGTAAGATGAAGATTTTAGCTGAAGTTGCTTTGGATTGTGTTGTGGATGAAAGAGATTCAAGGCCTACCATGAGTAGAGTTGTTGAGATGCTTCAATACCATGGAAATGATTGA 2376 0.3468 MDLSFTLFLLVLLAFSFQCSSSSSSSLTKGSSLSVENPEDKIISQNGIFSAGFISIGENAYSFAIWFNEPNSFNHKNTIVWMVNRDQPVNGKRSKLTLLNTGNIVLLDVSLNNVWSSNTASLEPLDLHLKNDGNLVLRELQGTKILWQSFDSPTDTLVPGQPLTRYTKLVASRSENNHSSGFYQFFFDDENILGLHYNGRDVSSSYWPKPWLLSWDVGRTNFNSSRIAVLDSFGEFYSSDNFTFTTSDYGSVMQRIMKLDSDGVVRVYSRINSSMNWYVSWLAFSGTCTVHGVCGANSTCSYSPKLGRKCSCIPGYRMKNPNDWSYGCEPMFDFTCNKSESTFLEMKNVEFYGYDFHYIEICNFSTCVDLCLQDCNCKAFQFSYWERHGFYRCFTKTQLQNGRYYPIFEGSTYLRLPKGNTFSLKQTSNPSNNVCSEKLQRVYVNEGENHFVKFFLWFATAIGAFQTVSIFIIWCSLFRTNQKTFADQQGYHLADIGFRKFSYFELKKATKGFSQEIGRGGGGVVYKGLLSDDRHAAIKRLYNAQQGEGEFLAEVGIIGRLNHMNLIEMWGYCAEGKYRLLVYEYMENGSLAENLSSNKLDWSKRYKIALAIARVLAYLHEECLEWILHCDIKPQNILLDSNFQPKLADFGLSKLQNRNNLNNSIVSMIRGTRGYMAPEWIFNLPITSKVDVYSYGIVVLEMITGKSPTTGFKIVNGEEISDGRLVTWVREKRGSSISWLEEIVDPNIGLNYDKSKMKILAEVALDCVVDERDSRPTMSRVVEMLQYHGND 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01072 791 Gene3D Phosphorylase Kinase; domain 1 477 585 - -
Tsu04g01072 791 Gene3D Transferase(Phosphotransferase) domain 1 586 791 - -
Tsu04g01072 791 SMART blect_4 24 153 IPR001480 -
Tsu04g01072 791 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 3 791 - -
Tsu04g01072 791 ProSiteProfiles PAN/Apple domain profile. 336 412 IPR003609 -
Tsu04g01072 791 Pfam Protein kinase domain 514 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01072 791 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 3 791 - -
Tsu04g01072 791 CDD PAN_AP_plant 335 417 - -
Tsu04g01072 791 CDD B_lectin 44 153 IPR001480 -
Tsu04g01072 791 PIRSF SRK 1 790 IPR024171 GO:0004674
Tsu04g01072 791 ProSiteProfiles Bulb-type lectin domain profile. 18 150 IPR001480 -
Tsu04g01072 791 SMART serkin_6 511 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01072 791 Pfam PAN-like domain 336 397 IPR003609 -
Tsu04g01072 791 Pfam D-mannose binding lectin 78 165 IPR001480 -
Tsu04g01072 791 CDD STKc_IRAK 517 786 - -
Tsu04g01072 791 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 207 IPR036426 -
Tsu04g01072 791 Pfam S-locus glycoprotein domain 239 319 IPR000858 GO:0048544
Tsu04g01072 791 ProSitePatterns Protein kinases ATP-binding region signature. 517 539 IPR017441 GO:0005524
Tsu04g01072 791 ProSiteProfiles Protein kinase domain profile. 511 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01072 791 SUPERFAMILY Protein kinase-like (PK-like) 490 787 IPR011009 -
Tsu04g01072 791 ProSitePatterns Serine/Threonine protein kinases active-site signature. 627 639 IPR008271 GO:0004672|GO:0006468
Tsu04g01072 791 Gene3D - 19 152 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01072 Tsu-Chr4 10410948 10413323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01072 501 785 Trihelix Transcription Factor Family AT5G38560 42.662 6.23e-68 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Tsu04g01072 Pkinase 5.8e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01072 - - gmx:100783758 1137.87