LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu04g01072	ATGGATTTGTCATTCACACTCTTTCTTCTAGTATTATTAGCCTTTTCATTCcaatgttcatcttcttcatcatcatcacttaCAAAAGGTTCATCCCTTTCAGTAGAAAATCCAGAAGATAAAATCATTTCACAAAATGGCATTTTCTCTGCTGGATTTATTTCCATTGGTGAAAATGCATATTCCTTTGCCATATGGTTCAATGAACCAAATTCCTTTAACCACAAAAACACAATCGTTTGGATGGTGAATCGGGACCAACCCGTTAACGGAAAACGATCAAAACTTACCCTTTTAAACACAGGAAACATTGTCTTGCTTGATGTTTCTTTAAACAATGTTTGGTCTTCAAACACAGCATCACTGGAACCATTAGATTTGCATCTCAAAAATGATGGAAATCTTGTGTTGCGTGAGCTTCAAGGAACTAAAATTTTGTGGCAGAGTTTTGATTCTCCAACAGATACTCTTGTTCCTGGTCAACCCCTTACAAGATATACAAAGCTTGTAGCATCAAGAAGTGAGAATAATCATTCTTCTGGCTTCTACCAGTTCTTCTTTGACGATGAAAACATACTCGGTCTTCATTACAATGGTCGCGATGTTTCTAGCTCTTATTGGCCAAAACCTTGGCTTCTAAGTTGGGATGTTGGCAGAACTAATTTCAATAGTAGCAGAATTGCAGTATTGGATTCTTTTGGTGAGTTCTATTCATCAGataattttacttttactaCTTCTGATTATGGATCTGTTATGCAAAGAATAATGAAATTGGATTCTGATGGTGTTGTGAGGGTTTATAGCAGAATTAATAGTTCAATGAATTGGTATGTTTCATGGCTAGCCTTTTCTGGTACTTGCACAGTTCATGGAGTTTGTGGAGCTAATAGTACTTGTAGTTATAGTCCTAAACTTGGAAGAAAGTGCTCTTGTATTCCAGGGTATAGAATGAAGAATCCTAATGATTGGTCTTATGGTTGTGAGCCTATGTTTGATTTCACATGCAACAAAAGTGAGTCAACCTTTTTAGAGATGAAAAATGTTGAGTTTTATGGATATGACTTTcattatattgaaatttgtaaCTTTAGTACTTGTGTGGATTTATGCTTACAAGATTGTAATTGTAAAGCATTTCAATTCTCATATTGGGAGAGACATGGCTTCTATAGATGTTTTACAAAAACACAATTGCAAAATGGAAGGTATTATCCCATTTTCGAAGGATCTACCTATTTGAGATTGCCTAAAGGTAATACCTTTTCTTTAAAACAAACTTCCAATCCAAGTAACAATGTTTGCTCAGAAAAACTTCAACGAGTTTACGTCAACGAAGGTGAGAACCATTTTGTAAAGTTTTTTCTATGGTTTGCCACCGCGATTGGAGCTTTTCAAACGGTCAGCATTTTCATCATTTGGTGTTCCTTATTTAGGACGAACCAAAAGACTTTTGCAGACCAACAGGGCTACCATCTAGCGGATATTGGGTTTAGAAAATTCAGTTACTTTGAGCTAAAGAAAGCAACAAAAGGGTTCAGTCAAGAGATCGGAAGAGGCGGAGGAGGTGTTGTATACAAAGGCCTATTATCTGATGATAGACATGCTGCAATAAAGAGACTTTACAATGCTCAACAAGGAGAAGGCGAGTTTCTTGCCGAAGTAGGCATCATTGGAAGGCTTAATCACATGAATTTGATTGAAATGTGGGGATATTGTGCCGAGGGAAAATATCGATTATTGGTTTATGAGTACATGGAAAATGGTTCTTTAGCTGAAAATCTATCATCTAATAAACTTGATTGGAGTAAAAGGTACAAAATTGCTTTAGCAATAGCAAGAGTTTTAGCATATCTACATGAAGAATGTTTGGAGTGGATTTTACATTGTGATATAAAGCCACAAAACATACTTCTTGATTCTAACTTTCAACCCAAGTTAGCTGATTTTGGATTGTCTAAACTCCAAAACAGAAACAACCTCAACAATTCAATTGTGTCTATGATTAGAGGAACAAGAGGGTATATGGCACCAGAATGGATTTTCAACTTGCCAATAACATCTAAGGTTGATGTTTATAGCTATGGAATTGTTGTGTTGGAAATGATAACAGGAAAAAGTCCAACTACAGGTTTCAAAATTGTTAATGGAGAAGAGATAAGTGATGGAAGATTGGTTACATGGGTGAGAGAAAAAAGAGGTAGTAGCATATCTTGGTtggaggaaattgttgatcCTAATATTGGATTAAATTATGATAAAAGTAAGATGAAGATTTTAGCTGAAGTTGCTTTGGATTGTGTTGTGGATGAAAGAGATTCAAGGCCTACCATGAGTAGAGTTGTTGAGATGCTTCAATACCATGGAAATGATTGA	2376	0.3468	MDLSFTLFLLVLLAFSFQCSSSSSSSLTKGSSLSVENPEDKIISQNGIFSAGFISIGENAYSFAIWFNEPNSFNHKNTIVWMVNRDQPVNGKRSKLTLLNTGNIVLLDVSLNNVWSSNTASLEPLDLHLKNDGNLVLRELQGTKILWQSFDSPTDTLVPGQPLTRYTKLVASRSENNHSSGFYQFFFDDENILGLHYNGRDVSSSYWPKPWLLSWDVGRTNFNSSRIAVLDSFGEFYSSDNFTFTTSDYGSVMQRIMKLDSDGVVRVYSRINSSMNWYVSWLAFSGTCTVHGVCGANSTCSYSPKLGRKCSCIPGYRMKNPNDWSYGCEPMFDFTCNKSESTFLEMKNVEFYGYDFHYIEICNFSTCVDLCLQDCNCKAFQFSYWERHGFYRCFTKTQLQNGRYYPIFEGSTYLRLPKGNTFSLKQTSNPSNNVCSEKLQRVYVNEGENHFVKFFLWFATAIGAFQTVSIFIIWCSLFRTNQKTFADQQGYHLADIGFRKFSYFELKKATKGFSQEIGRGGGGVVYKGLLSDDRHAAIKRLYNAQQGEGEFLAEVGIIGRLNHMNLIEMWGYCAEGKYRLLVYEYMENGSLAENLSSNKLDWSKRYKIALAIARVLAYLHEECLEWILHCDIKPQNILLDSNFQPKLADFGLSKLQNRNNLNNSIVSMIRGTRGYMAPEWIFNLPITSKVDVYSYGIVVLEMITGKSPTTGFKIVNGEEISDGRLVTWVREKRGSSISWLEEIVDPNIGLNYDKSKMKILAEVALDCVVDERDSRPTMSRVVEMLQYHGND	791

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu04g01072	791	Gene3D	Phosphorylase Kinase; domain 1	477	585	-	-
	Tsu04g01072	791	Gene3D	Transferase(Phosphotransferase) domain 1	586	791	-	-
	Tsu04g01072	791	SMART	blect_4	24	153	IPR001480	-
	Tsu04g01072	791	PANTHER	SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN	3	791	-	-
	Tsu04g01072	791	ProSiteProfiles	PAN/Apple domain profile.	336	412	IPR003609	-
	Tsu04g01072	791	Pfam	Protein kinase domain	514	782	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu04g01072	791	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5	3	791	-	-
	Tsu04g01072	791	CDD	PAN_AP_plant	335	417	-	-
	Tsu04g01072	791	CDD	B_lectin	44	153	IPR001480	-
	Tsu04g01072	791	PIRSF	SRK	1	790	IPR024171	GO:0004674

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu04g01072	Tsu-Chr4	10410948	10413323	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu04g01072	501	785	Trihelix Transcription Factor Family	AT5G38560	42.662	6.23e-68	236

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Tsu04g01072		Pkinase	5.8e-51	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu04g01072	-		-	gmx:100783758	1137.87

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