Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01061 ATGTTCTCTGCTGGCTTTATTTCCATTGGTGAAAATGCATATTCATTTGCCATATGGTTCAATGAACCAAATTCCTTTAACCACAAAAACACAATCGTTTGGATGGCGAATCGGGACCAACCCGTTAACGGAAAACGATCAAAACTTACCCTTTTAAACACAGGAAACATTGTCTTGCTTGATGTTTCTTTAAACAATGTTTGGTCTTCAAACACAGCATCACTGGAACCATTAGATTTGCATCTCAAAAATGATGGAAATCTTGTGTTGCGTGAGCTTCAAGGAACCAAAAATTTGTGGCAGAGTTTTGATTCTCCAACAGATACTCTTGTTCCTGGTCAACCCCTTACAAGATATACAAAGCTTGTAGCATCAAGAAGTGAGATAAATCATTCTTCTGGCTTCTACCAGTTCTTCTTTAACGATGAAAACATACTCGGTCTTCATTACAACGGACGTGATGTTTCTAGCTCTTATTGGCCAAAACCTTGGCTTCTAAGTTGGGATGTTGGCAGATCTAATTTCAATAGTAGCAGAATTGCAGTATTGGATTCTTTTGGTGAGTTCTATTCATCAGATAATTTCACTTTTACTACTTCTGATTATGGGTCTGTTAtgcaaagaataataaaattggattCTGATGGTGTCGTGAGAGTTTATAGCAGAATTAATAGTTCAATGAATTGGTATGTTTCATGGCTAGCCTTTTCTGGTACTTGCACAGCTCATGGAGTTTGTGGAGCTAATAGTACATGTAGCTATAGTCCTAAACTTGGAAGAAAGTGCTCTTGTATTCCAGGGTATAGAATGAAGAATCCTAATGATTGGTCCTACGGTTGTGAGCCTATGTTTGATTTCACTTGCAACAAAAGTGAGTCAACTTTCTTAGAGATGAAAAATGTTGAGTTTTATGGATATGACTTTcattatattgaaatttgtaaCTTTAGTACTTGTATTGATTTATGCTTACAAGATTGTAATTGTAAAGCATTTCAATTCTCATATTGGGAAAGACATGGCTTCTATAGATGTTTTACAAAAACACAATTGCAAAATGGAAGGTATTATCCCATCTTTGAAGGATCTACCTATTTGAGATTGCCTAAAGGTAATACCTTTTCTTTAAAACAAACTTCCAATCCAAGCAACAATGTTTGCTCCGAAAAACTTCAACGAGTTTATGTCAAAGAAGGTGAGAACCATTTTGTAAAGTTTTTTCTGCGGTTTGCCACCGCGATTGGAGCTTTTCAAACGGTCAGCATTTTCATCATTTGGTGTTCCTTATTTAGGACGAAACAAAAGACTTATGCAGACCAACAGGGCTACCATCTAGCGGATATTGGGTTTAGAAAATTCAGTTACTTGGAGCTGAAGAAAGCAACAAAAGGGTTCAGTCAAGAGATCGGAAGAGGCGGAGGAGGTGTTGTATACAAAGGCCTATTATCTGATGAAAGACATGCTGCAATAAAGAGACTTTACAATGCTCAACAAGGAGAAGGCGAGTTTCTTGCTGAAGTAGGCATCATTGGAAGGCTTAATCACATGAATTTGATTGAGATGTGGGGATATTGTGCCGAGGGAAAATATCGATTATTGGTATATGAGTACATGGAAAATGGATCTTTAGCTGAAAATCTATCGTCCAATAAGCTTGATTGGAGTAAAAGGTACAAAATTGCTTTAGCAATAGCGAGGGTTTTAGCATATCTACATGAAGAATGCTTGGAGTGGATTTTACATTGTGATATAAAGCCACAAAACATACTTCTTGATTCTAACTTTCAACCGAAGTTAGCTGATTTTGGATTGTCTAAGCTCAAAAACAGAAACAATCTCAAAAATTCGAGTGTGTCTATGATTAGAGGAACAAGAGGGTATATGGCACCTGAATGGATTTTCAACTTGCCAATAACATCTAAGGTTGATGTTTATAGCTACGGAATTGTTGTGTTGGAAATGGTAACAGGAAAAAGTCCAACCACAGGTTTCAAAATTGTTAATGGAGAAGAGATAAGTGATGGAAGGTTGGTTACCTGGGTGAGAGAAAAAAGAAGGAGTAGCATATCTTGGTTAGAGGAAATTGTTGATCCTAATATTGGAGTAAATTATGATAAAAGTAAGATAGAGATTTTAGCTAAAGTTGCTTTGGATTGTGTTGTGGATGAAAGAGATTCAAGGCCTACCATGAGTAGAGTAGTTGAGATGCTTCAATACAATGGAAATGATTGA 2235 0.3615 MFSAGFISIGENAYSFAIWFNEPNSFNHKNTIVWMANRDQPVNGKRSKLTLLNTGNIVLLDVSLNNVWSSNTASLEPLDLHLKNDGNLVLRELQGTKNLWQSFDSPTDTLVPGQPLTRYTKLVASRSEINHSSGFYQFFFNDENILGLHYNGRDVSSSYWPKPWLLSWDVGRSNFNSSRIAVLDSFGEFYSSDNFTFTTSDYGSVMQRIIKLDSDGVVRVYSRINSSMNWYVSWLAFSGTCTAHGVCGANSTCSYSPKLGRKCSCIPGYRMKNPNDWSYGCEPMFDFTCNKSESTFLEMKNVEFYGYDFHYIEICNFSTCIDLCLQDCNCKAFQFSYWERHGFYRCFTKTQLQNGRYYPIFEGSTYLRLPKGNTFSLKQTSNPSNNVCSEKLQRVYVKEGENHFVKFFLRFATAIGAFQTVSIFIIWCSLFRTKQKTYADQQGYHLADIGFRKFSYLELKKATKGFSQEIGRGGGGVVYKGLLSDERHAAIKRLYNAQQGEGEFLAEVGIIGRLNHMNLIEMWGYCAEGKYRLLVYEYMENGSLAENLSSNKLDWSKRYKIALAIARVLAYLHEECLEWILHCDIKPQNILLDSNFQPKLADFGLSKLKNRNNLKNSSVSMIRGTRGYMAPEWIFNLPITSKVDVYSYGIVVLEMVTGKSPTTGFKIVNGEEISDGRLVTWVREKRRSSISWLEEIVDPNIGVNYDKSKIEILAKVALDCVVDERDSRPTMSRVVEMLQYNGND 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01061 744 Pfam D-mannose binding lectin 31 118 IPR001480 -
Tsu04g01061 744 Pfam PAN-like domain 289 350 IPR003609 -
Tsu04g01061 744 CDD PAN_AP_plant 288 370 - -
Tsu04g01061 744 ProSitePatterns Serine/Threonine protein kinases active-site signature. 580 592 IPR008271 GO:0004672|GO:0006468
Tsu04g01061 744 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 1 744 - -
Tsu04g01061 744 Gene3D Transferase(Phosphotransferase) domain 1 539 743 - -
Tsu04g01061 744 Pfam Protein kinase domain 467 736 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01061 744 ProSiteProfiles Bulb-type lectin domain profile. 1 103 IPR001480 -
Tsu04g01061 744 Gene3D - 21 134 - -
Tsu04g01061 744 ProSitePatterns Protein kinases ATP-binding region signature. 470 492 IPR017441 GO:0005524
Tsu04g01061 744 CDD STKc_IRAK 470 739 - -
Tsu04g01061 744 PIRSF SRK 1 743 IPR024171 GO:0004674
Tsu04g01061 744 SUPERFAMILY Protein kinase-like (PK-like) 443 740 IPR011009 -
Tsu04g01061 744 SMART blect_4 4 106 IPR001480 -
Tsu04g01061 744 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 744 - -
Tsu04g01061 744 SUPERFAMILY alpha-D-mannose-specific plant lectins 32 123 IPR036426 -
Tsu04g01061 744 ProSiteProfiles Protein kinase domain profile. 464 741 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01061 744 SMART serkin_6 464 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01061 744 ProSiteProfiles PAN/Apple domain profile. 289 365 IPR003609 -
Tsu04g01061 744 Gene3D Phosphorylase Kinase; domain 1 429 538 - -
Tsu04g01061 744 Pfam S-locus glycoprotein domain 192 272 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01061 Tsu-Chr4 10312066 10314300 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01061 454 738 Trihelix Transcription Factor Family AT5G38560 40.956 1.36e-63 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Tsu04g01061 Pkinase 4.5e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01061 - - gmx:100783758 1091.64