Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01050 ATGGCTTTCACAGTTTCACATATTTTCCTTCTAATCATCTTTCTATTTCCTTTCCAATATTGTTCATGTTATTTAACATCATTGAAAAAGGGTTCATCTTTATCAGCAGAGAAATATGAAGAAGATGTAATTGTCTCTTCAAATGGAATATTCTCAGCTGGATTCTATCAAATTGGAGAAAATGCATTTTCATTTGCCATATGGTTTACAGAGCTGCACAATCAAAGTCATGATCCAGCCAATATTGTTTGGATGGCAAACCGTGAACAACCTGTGAATGGTAAGCTTTCAAAGCTTTTCCTCTTAAACACAGGTAACATTGTCTTGATTGATGCGGGCCAACACAACATTTGGTCTTCAAACACAGCATCAAACATTTCATTGGAGTTGTATCTCAAAGAAAATGGAAATCTTGTGTTACGTGAGCTTCAAGGAACTACCATCTTGTGGCAAAGCTATGGTTTTCCAACAAATACTCTGCTTCCTAATCAACCTCTCACTAGATACACAAATCTTGTTTCTTCACGAAGCCAGAGTAATCATTCTTCTGGCTTCTATAAGTTGTtctttgatgataacaatgttaTTCGTCTCGACTATAATGGTCCAGATGTTTCGAGTACATATTGGCCTCCGCCTTGGTTGTTAAGCTGGGAAGCTGGAAGGTTCAATTACAATAGTAGTAGAATTGCTTTGTTGGATTCTTATGGAAAATTCATTTCCTCTGATAATTACTCTTTTTCCACATATGATTATGGTATGGTTATGCAAAGAAGATTAACCATGGATTCTGATGGTAATATTCGAGTTTATAGTCGAAAAAACTTGTCAGAAATTTGGTATATTTCATATCAAGTCATAATTGATACTTGCATCATTCATGGAATTTGTGGTGAAAATAGCACTTGTAGCTATGATTCTAAAAAGGGTAAGAAATGTTCTTGTTTACCGGGGTATAAAGTGACGAACCACAGTGATTGGTCTTATGGCTGCAAACCTATGTTTGATTTTACTTGCAATAGAAGATTTCAATACATATTCATCGAGGATAAAGGCGTCTTCAATTGCTTTACAAAGCTACTGTTGTTGAATGGGAGGCATTCGCCAAGTTTTCTAGGAGCAACTTACTTAAGACTTCCAAAAGGTAATAACTTCTCTAAAGAAGTGACTATGAGTGTAAAAGATCAAATTTGTCGGGTGGAACTTTGCAGAGACTTTTCTAGAAAACCAACAAGTCATATGATAAAGTTTTTTCAATGGCTTGCAATTGCAGCTGGTGGTTTAGAATGTGTTTGTTTTAttgtggtttttgtttttttatttatcaacaaaaagagTAGTGAAGATAAACATAACTATCATCATGCATTGGGATTCAGAAGATATAGTTACTTCGAGTTGAAGGTAGCAACAAAGAATTTCAGTAATGAAATTGGAAGAGGTGGAGGCGGAGTTGTCTATAGAGGTACATTGCCGGATCAAAGACATGTAGCTGTAAAGAGATTGTATGAAGCTAAACAAGGAGAAGGAGAGTTTCTTGCTGAAGTAAGCATCATTGGAAGACTTAACCATATGAACTTGATAGAAATGTGGGGTTATTGTGTTGAAGGTAAACATCGACTGTTGGTATATGAGTACATGGAAAATGGTTCTTTAGCTGAAAATCTTTCATCTAAAACTAATATCCTAGATTGGAGTAAAAGGTATGATATTGCTTTAGGAACATCTAAAGTTCTAGCTTATCTACATGAAGAATGTTTGGAATGGATTTTGCATTGTGATATAAAGCCACAAAATATACTTCTTGATTCTAACTTTCAACCCAAGTTAGCAGATTTTGGATTGTCTAagctaaaaaatagaaacaatctCAACAATAATTCAGAATTCTCAATGATTAGAGGAACAAGAGGATATATGGCCCCCGAATGGATTTTGAATTTACCAATAACGTCTAAAGTGGACGTTTATAGTTATGGGGTTGTTTTGTTGGAGATGATAACCGGAAAGAGTTCAACAATGATAGAAGGAGGTGATGGAAGGTTGATAACTTGGGTTAGAGAGAAAAAGAGGAGTACATGTTGGGTGGAAGAAATCATGGATCCTTCAATTTTGAATAACTGTGATTTAAGTAAAATGGAAATTTTGGCTAGAGTTGCTTTGGAATGTGTTGAGGAAGATAGGGATATTAGACCTTCTATGAGTCAAGTGGTTGAGATGCTTCAAAGTCGTGATAGAGAACTCGAGTGA 2250 0.3449 MAFTVSHIFLLIIFLFPFQYCSCYLTSLKKGSSLSAEKYEEDVIVSSNGIFSAGFYQIGENAFSFAIWFTELHNQSHDPANIVWMANREQPVNGKLSKLFLLNTGNIVLIDAGQHNIWSSNTASNISLELYLKENGNLVLRELQGTTILWQSYGFPTNTLLPNQPLTRYTNLVSSRSQSNHSSGFYKLFFDDNNVIRLDYNGPDVSSTYWPPPWLLSWEAGRFNYNSSRIALLDSYGKFISSDNYSFSTYDYGMVMQRRLTMDSDGNIRVYSRKNLSEIWYISYQVIIDTCIIHGICGENSTCSYDSKKGKKCSCLPGYKVTNHSDWSYGCKPMFDFTCNRRFQYIFIEDKGVFNCFTKLLLLNGRHSPSFLGATYLRLPKGNNFSKEVTMSVKDQICRVELCRDFSRKPTSHMIKFFQWLAIAAGGLECVCFIVVFVFLFINKKSSEDKHNYHHALGFRRYSYFELKVATKNFSNEIGRGGGGVVYRGTLPDQRHVAVKRLYEAKQGEGEFLAEVSIIGRLNHMNLIEMWGYCVEGKHRLLVYEYMENGSLAENLSSKTNILDWSKRYDIALGTSKVLAYLHEECLEWILHCDIKPQNILLDSNFQPKLADFGLSKLKNRNNLNNNSEFSMIRGTRGYMAPEWILNLPITSKVDVYSYGVVLLEMITGKSSTMIEGGDGRLITWVREKKRSTCWVEEIMDPSILNNCDLSKMEILARVALECVEEDRDIRPSMSQVVEMLQSRDRELE 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01050 749 Pfam D-mannose binding lectin 82 168 IPR001480 -
Tsu04g01050 749 SMART serkin_6 472 741 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01050 749 PIRSF SRK 1 360 IPR024171 GO:0004674
Tsu04g01050 749 PIRSF SRK 345 749 IPR024171 GO:0004674
Tsu04g01050 749 SMART blect_4 35 156 IPR001480 -
Tsu04g01050 749 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 5 341 - -
Tsu04g01050 749 Gene3D Transferase(Phosphotransferase) domain 1 547 749 - -
Tsu04g01050 749 ProSitePatterns Protein kinases ATP-binding region signature. 478 500 IPR017441 GO:0005524
Tsu04g01050 749 Pfam Protein kinase domain 475 739 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01050 749 ProSiteProfiles Protein kinase domain profile. 472 748 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01050 749 SUPERFAMILY Protein kinase-like (PK-like) 450 742 IPR011009 -
Tsu04g01050 749 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 339 746 - -
Tsu04g01050 749 CDD B_lectin 44 156 IPR001480 -
Tsu04g01050 749 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 5 341 - -
Tsu04g01050 749 Pfam S-locus glycoprotein domain 238 321 IPR000858 GO:0048544
Tsu04g01050 749 SUPERFAMILY alpha-D-mannose-specific plant lectins 81 211 IPR036426 -
Tsu04g01050 749 ProSiteProfiles EGF-like domain profile. 287 325 IPR000742 -
Tsu04g01050 749 Gene3D - 20 154 IPR036426 -
Tsu04g01050 749 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 339 746 - -
Tsu04g01050 749 ProSitePatterns Serine/Threonine protein kinases active-site signature. 590 602 IPR008271 GO:0004672|GO:0006468
Tsu04g01050 749 Gene3D Phosphorylase Kinase; domain 1 439 546 - -
Tsu04g01050 749 ProSiteProfiles Bulb-type lectin domain profile. 30 153 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01050 Tsu-Chr4 10209601 10212712 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01050 423 748 Receptor kinase-like Gene Family AT1G56120 40.597 7.03e-63 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Tsu04g01050 Pkinase 1.9e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01050 - - gmx:100784287 1003.05