Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01008 ATGGATTTCAGCTACTTTGCATATTTGGTCTCTGTTTTGTTCATTTTGTGTTGCtatttgttacaagttagtgtTGGTATAGACACCATCACATCATCTCAATTCATCAAGGACCCTGAAACACTAATATCCAAAGATGGTAATTTCACCTTTGGATTCTTTAGCCCTATAAATTCTACAAACCGCTACGTTGGAATTTGGTGGAAGTCTCGTTCTACAGTCTTATGGGTGGCAAACAGAAACCTACCACTGAATGATTCTAATGGGATTGTCACAATATCTGAAGATGGAAATCTCGTCGTATTAAATGGACAGAAACAAGTCATTTGGTCATCAAATGTTTCCAACATAGCATCCAATAGAAGTTGTCAGTTTTCGGACTTTGGTAACCTTGTCCTTTTGGAGAGTACAACTGGAAACATCTTATGGCAGAGTATTCAGCAACCTTCAGATACGTTACTTCCTGGCATGAAACTTTCAACCAACAAAAGAACAGGTAAGAGTGTAAACCTTAATTCATGGGAAAGCCCTTCTGACCCATCTGTTGGAAACTTCTCTTGTAGTACTGTTGAACACCTTCATATAATTCAAGTGTTCGTTTGGAATGATACTCGTCCATATTGGCGCAGTGGTCCTTGGAATGGCGGGGTCTTCACTGGGATACAAACAATGACAGTggcatatttttttggttttcgaGGGGGTGATGATGGAGAAGGGAATACTAACATATATTATACAATACAAAATGACGAGGAATTTTTTATCTATCACCTGAATTCACAAGGAAAATTAGAAGAAACATGGTGGGatgatgagaagaaagaaatgcAAGTTACATGGACAAGCCAAGAATCAGAGTGTGATGTTTATAGTATATGTGGGGAATTTTCAAGCTGTAATTCATTGAGCTCACCAATATGTAGCTGTTTGAGAGGATTTCAACCCCGAAATATACAAGAGTGGAATATGCATAACTGGACCGGTGGGTGTGTTAGGAGGACACCTTTGCAATGTGAAAGGGTCAACAATACAAAGGAAGATGGGTATTTGAAACTACAGATGGTTAAAGTTCCAGATTTTGCTGAAGGTTTAGCTGTTACACCAGACATATGCAGAAGCCTATGTTTGGAGAATTGCTCTTGCCTTGCATATTCTCACGAGGCTGTGATTGGCTGTATGACTTGGACCGGGAATCTACTTGACATACAACAACTCCAAAGTGGAGGACTTGATCTATATGTTCGCTTAGCATATGCAGAACTTGATCGAGGGAGAAACAAGATAATCATCGTTGTAATTACAGTGATTGTTGGAACTTTCATAGTTGTCATTTTTGCATATATAATCTGGAGAAGGACATCAAACCACCCAGCTAAACTATGGCTTTTTACTAAATCAGCAAGGAAAAAGAACAACAAAGCTTTCCAACGTTTTTATAAAGGTGGATCACCAGAAGGATATGCTCGTGACAATGTAAATAGGGAAATGTCCCAAGTTAAACTACAAGAGctattaatatttgattttgaaaagctTGCAACTGCCACAAACAACTTCCACTTATCCAACAAACTTGGGCAGGGTGGTTTTGGTCCTGTATACAAGGGGAAACTACAAGATGGTCGGGAAATAGCTGTTAAAAGACTCTCTAGAGGATCTGGACAAGGGCTGGAGGAATTCATGAATGAAGTAGTGGTGATTTGTAAGCTTCAACACCGCAATCTTGTAAGACTTCTTGGTTGCTGTATTGAAGGTGATGAAAAGATGTTGATGTATGAGTACATGCCAAACAAAAGTTTGGACGCATTCATCTTTGATCCATCAAAAAACAAACTCCTAGACTGGAGGACACGGTATAGCATAATAGAAGGAATAGCTCGAGGATTGCTATATCTTCACAGAGATTCTAGACTAAGAATTATTCACAGAGATTTGAAGGCAAGTAATATCTTGTTAGATGACGAGCTGAATCCAAAAATATCAGACTTTGGTATGGCTAGAATCTTTGGAGGGGGAGAAGATCAGGCCAATACTAACAGGATTGTTGGAACTTATGGCTATATGTCTCCTGAATATGCAATGCAAGGATTATTTTCAGAGAAGTCAGATGTTTTTAGCTTTGGTGTTTTGATACTTGAGATTCTTACCGGGAGAAGGAACTCAAGTTTTTATGACAATGAGCATGCTCTGAGCCTTTTAGGATCTGTGTGGATAAAATGGGGGGAAGATAATATAATATCTCTCATAGATCAAGGAATATATGATCCTAGTCATCATAATTACATTTTAAGGTACATACATATAGGACTTTTGTGCACACAAGAACTTGCTGTAGATAGGCCCACTATGGCTGCAGTAATTTCTATGCTTAACAGTGAAACTGCATTACTCCCTCCTCCTAGTAAGCCTGCATTTATCCTGATGAAGAATATGTTGAATCCAAATGGGCCTGAAGAATGTCAAAGTGGTAGTTCTATCAATAATATCAGTATTACAGATATCTATGGCAGATAG 2517 0.3754 MDFSYFAYLVSVLFILCCYLLQVSVGIDTITSSQFIKDPETLISKDGNFTFGFFSPINSTNRYVGIWWKSRSTVLWVANRNLPLNDSNGIVTISEDGNLVVLNGQKQVIWSSNVSNIASNRSCQFSDFGNLVLLESTTGNILWQSIQQPSDTLLPGMKLSTNKRTGKSVNLNSWESPSDPSVGNFSCSTVEHLHIIQVFVWNDTRPYWRSGPWNGGVFTGIQTMTVAYFFGFRGGDDGEGNTNIYYTIQNDEEFFIYHLNSQGKLEETWWDDEKKEMQVTWTSQESECDVYSICGEFSSCNSLSSPICSCLRGFQPRNIQEWNMHNWTGGCVRRTPLQCERVNNTKEDGYLKLQMVKVPDFAEGLAVTPDICRSLCLENCSCLAYSHEAVIGCMTWTGNLLDIQQLQSGGLDLYVRLAYAELDRGRNKIIIVVITVIVGTFIVVIFAYIIWRRTSNHPAKLWLFTKSARKKNNKAFQRFYKGGSPEGYARDNVNREMSQVKLQELLIFDFEKLATATNNFHLSNKLGQGGFGPVYKGKLQDGREIAVKRLSRGSGQGLEEFMNEVVVICKLQHRNLVRLLGCCIEGDEKMLMYEYMPNKSLDAFIFDPSKNKLLDWRTRYSIIEGIARGLLYLHRDSRLRIIHRDLKASNILLDDELNPKISDFGMARIFGGGEDQANTNRIVGTYGYMSPEYAMQGLFSEKSDVFSFGVLILEILTGRRNSSFYDNEHALSLLGSVWIKWGEDNIISLIDQGIYDPSHHNYILRYIHIGLLCTQELAVDRPTMAAVISMLNSETALLPPPSKPAFILMKNMLNPNGPEECQSGSSINNISITDIYGR 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01008 838 Gene3D Transferase(Phosphotransferase) domain 1 596 797 - -
Tsu04g01008 838 CDD B_lectin 33 145 IPR001480 -
Tsu04g01008 838 SMART serkin_6 520 833 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01008 838 Gene3D Phosphorylase Kinase; domain 1 483 595 - -
Tsu04g01008 838 ProSiteProfiles PAN/Apple domain profile. 339 418 IPR003609 -
Tsu04g01008 838 ProSiteProfiles Protein kinase domain profile. 520 797 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01008 838 SMART blect_4 33 149 IPR001480 -
Tsu04g01008 838 SMART ntp_6 345 417 IPR003609 -
Tsu04g01008 838 Pfam D-mannose binding lectin 73 174 IPR001480 -
Tsu04g01008 838 Pfam S-locus glycoprotein domain 208 317 IPR000858 GO:0048544
Tsu04g01008 838 Gene3D - 22 147 IPR036426 -
Tsu04g01008 838 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 21 835 - -
Tsu04g01008 838 SUPERFAMILY Protein kinase-like (PK-like) 507 814 IPR011009 -
Tsu04g01008 838 SUPERFAMILY alpha-D-mannose-specific plant lectins 64 180 IPR036426 -
Tsu04g01008 838 Pfam Protein tyrosine and serine/threonine kinase 521 790 IPR001245 GO:0004672|GO:0006468
Tsu04g01008 838 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 21 835 - -
Tsu04g01008 838 Pfam PAN-like domain 344 403 IPR003609 -
Tsu04g01008 838 CDD STKc_IRAK 526 792 - -
Tsu04g01008 838 ProSitePatterns Serine/Threonine protein kinases active-site signature. 641 653 IPR008271 GO:0004672|GO:0006468
Tsu04g01008 838 CDD PAN_AP_plant 335 418 - -
Tsu04g01008 838 ProSiteProfiles Bulb-type lectin domain profile. 27 146 IPR001480 -
Tsu04g01008 838 PIRSF SRK 1 838 IPR024171 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01008 Tsu-Chr4 9687838 9691490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01008 423 838 Receptor kinase-like Gene Family AT4G05200 48.712 6.77e-127 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu04g01008 PK_Tyr_Ser-Thr 2.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01008 - - gmx:100779455 1246.88