Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00976 ATGCAATTGAGATGCAATTGGTGTCGCGTACTTTGCAAAGGATGCAATGAAGACTGCATCATCAAGCCATGCCTTGAGTGGATCAGTTCCCCTAAATCTCAAGGCAATGCCACCCTTTTCCTTGTCAAATTCTATGGTCGAACCGGCTTGCTCAACCTCCTTACTAATGCTACCCCTCAAAATGCTCCAGCTGTTTTCAAATCACTGTTGTATGAAGCTTCATGTAGATTGGTGAATCCTACACATGGGGCACTAGGTTTATTTTGGATTGGAGAATGGAGCCGATGTGAAGCTGCAGTTGAAGTTGTGCTAAATGGATCAAATATTAATCCTGCTACATGTTTTGATGGACAAACATCATCATGTAACCTCATTGTTGAAAATCCTGTTATTCCAACAACCTATGATATACGCCACGTGACGAGAGGTACCTACGTGAACATCAAAGAGAAAATTCAATTCAAGAGAGTTGGGTCAGCTTTCAAGCCCAAGCCGCGAGTTGGTTTGGTTGTCAAGACTACACTTTTGAGATATGTTTTGGAGAGTGGCAGGGCAAAAACTTTGGAGGCCAATCCGTCAATGGTTGAGATATAA 594 0.4259 MQLRCNWCRVLCKGCNEDCIIKPCLEWISSPKSQGNATLFLVKFYGRTGLLNLLTNATPQNAPAVFKSLLYEASCRLVNPTHGALGLFWIGEWSRCEAAVEVVLNGSNINPATCFDGQTSSCNLIVENPVIPTTYDIRHVTRGTYVNIKEKIQFKRVGSAFKPKPRVGLVVKTTLLRYVLESGRAKTLEANPSMVEI 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00976 197 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Tsu04g00976 197 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 190 - -
Tsu04g00976 197 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Tsu04g00976 197 PANTHER LOB DOMAIN PROTEIN 1 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00976 Tsu-Chr4 9292328 9293427 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00976 1 142 AS2 family AT1G68510 52.778 3.37e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu04g00976 LOB 3.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00976 - - mtr:MTR_1g110840 253.447