Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00942 ATGGAACAACAACAAAACTCCCCTAACAACACTAACCAAAATCACAcatcaaaaacaacaacaaccttaaTTAAAACAAATGGAACAACAAACTcttatcaacatcatcatcaatattatcaacaacatcatcatcaacaacatcaaaatcaaCTTCAACAATACTCAACTCAACTTGgtttcttcaacaacaacaacaaaaactatCAAAGATATTACCCTGCTCTTCTTCCTTTACCTTCACTTCAACAACTACCTTTAATTCCATCTTTTcctcaaaatcaaaactttaaacTAAAAACCCATTTGCATAAACTTCCATGCAAACTCAATACTTCTCCTTCATCAGATTACAATCTTTCTCAACCATCACTTGTTTCTGCTCCAAAGGAACTtcagaagaaaacaaaatccTCTTTTAAAGAAGTTGATGAGAAGAAGCTGATTTCAACAAGGAAGCCACAAGAAGTGATTGTTGCAATAAGGCCAGACTCAGGTGGACAAGAAGGTCCTGTGATCTCTCTCCTTGCAAACCACTTTTTGGTTAAGTTTGATTCATcccaaaaaatatatcattacaATGTTGAAATTACTCCTCATCCCTCTAAAGATGTTGCTAGAGCAATCAAACATAAGTTGGTACATAACAATTCCGAGATTTTATCGGGCGCGCTGCCGGCGTATGATGGGAGGAAGAATCTTTATAGTCCAATTGAATTCCAAAATGATAAGCTTGAGTTTTACATAAGCCTCCCAATTCTGACTAGCAAATCGACGTCGCTTTATGGAGAAATGAATGATAGGGAAGAGAAGCGTGAACAACATAAACTTTTTCGGATAAATATCAAACTAGTCTCGAAGATTGATGGAAAGGAGTTGGCTAACTACTTGAGCAAAGATGGTGATGAAGGGATTCCACTTCCACAGGATTATTTACATGCTTTGGATGTTGTTTTGAGGGAAAGTCCGACTGAGAAATGTATACCTGTTGGAAGGTCATTCTATTCGAGTTCGATGGGAAGAGGCAAAGATATTGGTGGAGGAGCTGTTGGATTGAGAGGCTTTTTTCAAAGTCTTAGACCAACTCAACAAGGACTTGCTCTCAATGTTGATTTTTCAGTAACCGCTTTCCATGAGAGTATAGGAGTTATTCCGTATTTGCAGAAACGTCTCGAGTTTCTTAGAGACCTTTCTCAAAGGAAGACAACTGAGTTAACTTGTGAAGAAAGGAAGGAAGTGGAGAAAGCATTGAAGAACATTAGAGTCTTTGTTTGCCATAGAGAAACTGTTCAGAGATACCGTGTCTACGGTTTAACTGAGGAGGCAACTGAAAATATTTGGTTTCCCGATAGAGATGGAAAGAATCTGAGGCTAATGAGTTACTTTAAAGATCACTATAACTATGATATTCAATTCAGAAAGTTGCCATGCTTGCAAATTAGTAGGAGTAAACCTTGTTATCTCCCTATGGAGCTCTGTGTGATCTGTGAAGGACAGAAGTTCTTAGGGAAACTGTCGGATGATCAGACGGCAAAAATACTGAAGATGGGCTGTCAAAGACCGGGGGAACGAAAAGCCATCATCGAAGGAGTCATGAGAGGAAATGTTGGTCCTACCAGTGGTGACCAGGAAGGGGAATTCAAACTCCAAGTCTCAAGAGAAATGACAAAGTTGACTGGAAGAATTCTTTACCCTCCCAAACTAAAGCTCGGAGACGGAGGTCATGTGAGAAACTTGACTCCTTCACGTCACGATCGCCAGTGGAACCTACTAGATGGCCATGTCTTTGAAGGAACAACAATTGAAAGGTGGGCACTAATAAGTTTTGGAGGTACACCTGAGCAAAAATCTCATATCCCGAGATTCATAAACCAGTTAACTCAAAGATGCGAACAATTAggcatttttcttaataagaaCACAGTTATTAGTCCACAGTTTGAATCAATCCAAGTTCTTAACAATGTTACACTTTTGGAATCTAAGCTCAATAGAATCCAAAGGATTGCCTCAAACAAGCTACAGCTTCTTATTTGTATAATGGAGAAAAAACACAAAGGGTATGGAGACTTGAAACGAATTGCCGAGACAAGTGTTGGTGTTGTAAGCCAATGCTGCCTGTATCCAAATCTCATCAAATTAAGTTCACAGTTTTTGGCTAATTTGGCTCTCAAGATCAATGCTAAAGTCGGTGGATGCACAGTTGCTTTGTACAACTCGCTTCCTTCTCAATTACCACGTCTTTTCAACATCGATGAACCAGTGATGTTCATGGGAGCTGATGTAACACATCCTCATCCTCTCGACGATTCGAGTCCATctgttgctgctgttgttgGTAGTATGAATTGGCCAACAGCAAACAAATATATTTCAAGAATAAGGTCTCAAACACATAGACAAGAAATCATCGCAGATCTCGGCCCAATGGTTGGAGAATTGCTTGACGATTTTTATCAAGAAGTAGAAAAACTCCCCAACAGAATAATTTTCTTCCGAGACGGTGTTAGCGAAACTCAATTTCACAAAGTGCTGCAAGAGGAACTTCAATCCATAAAACAAGCATGTTCATCAAGGTTTCATggttataaaccttttattactTTTGTAGTTGTACAAAAGAGACATCACACAAGGTTATTTCCTGCCGACACCGATCAATCTTCGACGCAgaacaattttcattttcaatacgAAAATATTCCTCCAGGAACTGTGGTTGATTCTGTGATTACTCATCCAAAGGAATTTGATTTCTATCTGTGTAGTCATTGGGGTGTGAAGGGAACAAGTAGGCCAACTCATTACCATGTTTTGTGGGATGAAAATCAGTTCACTTCAGATGAACTGCAGAAGCTGGTTTACAATTTGTGCTTTACTTTTGTTAGGTGTACTAAGCCAATATCTTTGGTTCCTCCTGCATATTATGCACATTTAGCTGCATATAGAGGTAGACTCTACCTTGAGAGATCAGAGTCATTAGGTTTGTTCAGAAGTGATTCTACATTATCAAGAGCTGCTCCTCCAAAGACACCACCTCTACCTAAACTTAGTGAAAACATAAAGAAGCTGATGTTTTACTGCTAG 3087 0.3641 MEQQQNSPNNTNQNHTSKTTTTLIKTNGTTNSYQHHHQYYQQHHHQQHQNQLQQYSTQLGFFNNNNKNYQRYYPALLPLPSLQQLPLIPSFPQNQNFKLKTHLHKLPCKLNTSPSSDYNLSQPSLVSAPKELQKKTKSSFKEVDEKKLISTRKPQEVIVAIRPDSGGQEGPVISLLANHFLVKFDSSQKIYHYNVEITPHPSKDVARAIKHKLVHNNSEILSGALPAYDGRKNLYSPIEFQNDKLEFYISLPILTSKSTSLYGEMNDREEKREQHKLFRINIKLVSKIDGKELANYLSKDGDEGIPLPQDYLHALDVVLRESPTEKCIPVGRSFYSSSMGRGKDIGGGAVGLRGFFQSLRPTQQGLALNVDFSVTAFHESIGVIPYLQKRLEFLRDLSQRKTTELTCEERKEVEKALKNIRVFVCHRETVQRYRVYGLTEEATENIWFPDRDGKNLRLMSYFKDHYNYDIQFRKLPCLQISRSKPCYLPMELCVICEGQKFLGKLSDDQTAKILKMGCQRPGERKAIIEGVMRGNVGPTSGDQEGEFKLQVSREMTKLTGRILYPPKLKLGDGGHVRNLTPSRHDRQWNLLDGHVFEGTTIERWALISFGGTPEQKSHIPRFINQLTQRCEQLGIFLNKNTVISPQFESIQVLNNVTLLESKLNRIQRIASNKLQLLICIMEKKHKGYGDLKRIAETSVGVVSQCCLYPNLIKLSSQFLANLALKINAKVGGCTVALYNSLPSQLPRLFNIDEPVMFMGADVTHPHPLDDSSPSVAAVVGSMNWPTANKYISRIRSQTHRQEIIADLGPMVGELLDDFYQEVEKLPNRIIFFRDGVSETQFHKVLQEELQSIKQACSSRFHGYKPFITFVVVQKRHHTRLFPADTDQSSTQNNFHFQYENIPPGTVVDSVITHPKEFDFYLCSHWGVKGTSRPTHYHVLWDENQFTSDELQKLVYNLCFTFVRCTKPISLVPPAYYAHLAAYRGRLYLERSESLGLFRSDSTLSRAAPPKTPPLPKLSENIKKLMFYC 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00942 1028 Pfam PAZ domain 391 513 IPR003100 GO:0005515
Tsu04g00942 1028 CDD PAZ_argonaute_like 391 496 - -
Tsu04g00942 1028 Pfam Piwi domain 677 986 IPR003165 GO:0003676
Tsu04g00942 1028 Pfam Argonaute linker 1 domain 329 378 IPR014811 -
Tsu04g00942 1028 SMART PAZ_2_a_3 388 528 IPR003100 GO:0005515
Tsu04g00942 1028 Gene3D - 748 1028 IPR036397 GO:0003676
Tsu04g00942 1028 Gene3D paz domain 374 501 - -
Tsu04g00942 1028 ProSiteProfiles PAZ domain profile. 388 497 IPR003100 GO:0005515
Tsu04g00942 1028 PANTHER PROTEIN ARGONAUTE 7 120 1027 - -
Tsu04g00942 1028 Gene3D - 562 738 - -
Tsu04g00942 1028 Pfam N-terminal domain of argonaute 173 319 IPR032474 -
Tsu04g00942 1028 ProSiteProfiles Piwi domain profile. 676 989 IPR003165 GO:0003676
Tsu04g00942 1028 SUPERFAMILY PAZ domain 375 533 IPR036085 GO:0005515
Tsu04g00942 1028 SMART DUF1785_2 328 380 IPR014811 -
Tsu04g00942 1028 SMART Piwi_a_2 676 989 IPR003165 GO:0003676
Tsu04g00942 1028 CDD Piwi_ago-like 546 988 IPR045246 -
Tsu04g00942 1028 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 120 1027 - -
Tsu04g00942 1028 SUPERFAMILY Ribonuclease H-like 660 989 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00942 Tsu-Chr4 9032712 9037503 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00942 161 1028 Eukaryotic Initiation Factors Gene Family AT1G48410 41.989 0.0 643
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00942 K11593 - gmx:100797755 1716.82