Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00928 ATGACCAAAGATCAAGCATTTTCTGCAAGAAGAAATATATGCTATGATGAATATGGTGAAGCATTGATATGTAGCGATTCTGATGAAGATGCCAAAGCGAATAGAGAAGTTAAACATGACTTTTCTCACGGTGAAGACCAACTTATTTGGATGGCATTTGAGGATGAGGAGCACAAATTAACCGAGGAGGTGTTGAGTATCGTTCAAAGCAGTATTGGGGGTACCTATTCGGAGATTGAGGAGAGGTATAACTATCTCAAGGAAAAGGGCATGCATTCTACAGAAAGTGGATCTAATACTGTCATATGTTTGGACAAAAGTTTGAGTGAAGCTATAAATACTTTGGATCACTTGTTCTGTCGTCGTTGCATGATCTATGACTGTCCGTTCCATGAATGTCCACAAAAGTTATTTTATCCTACTGAAAAACAACCAACTTGGAATGAACCGCAAAATGAAAGGCAACCATGCAGTGAACATTGTTATCTTGAgTTGAAGGATGCCAATACAAATTCATCTCCAGAGTCTTTGCTAggtaaagaaattaaaacaatagAAACTGCAGATGAGGTATTTGCACCCTCTAGTTCAAAGACAATCACAGATAAAATAGAATTGATGAGTTTATCCAACTCAATGGAAGAGCAAGAGCAAGATGATAGCTCAGATTGGAAACCTTTGGAGAAAGAATTATGTTTGAAGGGAATAGAAATGTTTGGAAAAAACAGTTGTCTTATACATCGGAACTTACTTTGTGGATTCAAGACTTGCATGGAAATAGGCTGCTACATGTCTGAAAGGTTCAAGGACAATGACATGCCATCAAGTTCAAGGCGATCtaagagaaaaggaaaaagcAAGAGATTTTTTCATAGGAGAAGAAATTATATTGCtagggaagaagatgaacccCTTAAGCATTATACACCTTGTGAGTGTCAAGGAATGTGTGGAAAAGAATGTCCTTGTTATATTAAAGGACCTAGAGGAACTTGTGAAAAATATTGTGGGTGTGCAAAGCAATGCAATCATCGGTACAAAGGATGTCTCTGTTGTATAGGTCAATGTAGAAGTCACCAATGCCCATGTGTTGTAGAAGATCGTGAATGTGACCCTGATGTTTGTGAAAATTGTTGGGTTAGGTGTGGCGATGGTTCATCAAAGGAACCACCTGATCAAGAAAATGTTCATCAATgtgaaaatatgaaaatgtttTTGGGGATAAAACAAAAGATTCTTTTAGGCAAGTCTGAAGTTGCTGGATGGGGAGCCTTCATAAAGAACCCCGTCAAAAAAGGTGAATATTTAGGAGAGTACACAGGTGAATTAATCTCTCATGCAGAAGCAGAAAAACGTGGTAAATTATATGAGCGTGCGGGCTTCTCTTACCTTTTTGACTTGGATGATAAGtATTGTATCGATGCTTATCGTAtgggaaacaagttaaaatttGCAAACCACTCATCAGAGCCCAATTGTTATCCAAAGGGTATGTTTGTTGGAGGAGATCATCGAATTGGAATATTTGCCAAGGATAACCTTAAAGCCGGTGAAGAACTTTTCTATGATTACCACTATACCAAATATCAAAAAGCACCTAAATGGTTTCTTGACCAATCCAAGAAAAAAGAATCTAAAAATTCTGGTGGCAAGGGCAGGGTTGTTTCAAAGGTCAAGTAG 1680 0.3607 MTKDQAFSARRNICYDEYGEALICSDSDEDAKANREVKHDFSHGEDQLIWMAFEDEEHKLTEEVLSIVQSSIGGTYSEIEERYNYLKEKGMHSTESGSNTVICLDKSLSEAINTLDHLFCRRCMIYDCPFHECPQKLFYPTEKQPTWNEPQNERQPCSEHCYLELKDANTNSSPESLLGKEIKTIETADEVFAPSSSKTITDKIELMSLSNSMEEQEQDDSSDWKPLEKELCLKGIEMFGKNSCLIHRNLLCGFKTCMEIGCYMSERFKDNDMPSSSRRSKRKGKSKRFFHRRRNYIAREEDEPLKHYTPCECQGMCGKECPCYIKGPRGTCEKYCGCAKQCNHRYKGCLCCIGQCRSHQCPCVVEDRECDPDVCENCWVRCGDGSSKEPPDQENVHQCENMKMFLGIKQKILLGKSEVAGWGAFIKNPVKKGEYLGEYTGELISHAEAEKRGKLYERAGFSYLFDLDDKYCIDAYRMGNKLKFANHSSEPNCYPKGMFVGGDHRIGIFAKDNLKAGEELFYDYHYTKYQKAPKWFLDQSKKKESKNSGGKGRVVSKVK 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00928 559 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 208 552 - -
Tsu04g00928 559 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 1 198 - -
Tsu04g00928 559 SMART set_7 410 531 IPR001214 GO:0005515
Tsu04g00928 559 Pfam SET domain 421 524 IPR001214 GO:0005515
Tsu04g00928 559 ProSiteProfiles SET domain profile. 410 525 IPR001214 GO:0005515
Tsu04g00928 559 SUPERFAMILY SET domain 303 532 IPR046341 -
Tsu04g00928 559 Pfam CXC domain 348 379 IPR041355 -
Tsu04g00928 559 Gene3D SET domain 308 527 IPR046341 -
Tsu04g00928 559 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 208 552 IPR045318 GO:0006338|GO:0018024
Tsu04g00928 559 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 1 198 IPR045318 GO:0006338|GO:0018024
Tsu04g00928 559 CDD SET_EZH 410 526 - -
Tsu04g00928 559 ProSiteProfiles CXC domain profile. 294 395 IPR026489 -
Tsu04g00928 559 MobiDBLite consensus disorder prediction 540 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00928 Tsu-Chr4 8878357 8885365 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00928 399 524 C2H2 Transcription Factor Family AT2G23740 31.469 4.62e-14 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tsu04g00928 SET 4.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00928 - - mtr:MTR_7g055660 701.049