Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu04g00920 | ATGGGAAACGGTGAGGACAAAAAATTGAAGCACAGAGTGGAAGAGAAGCTAGAGCCGAGATTTGAGAATGAACCAAAGACAATGCCACCATCCTCTCAATCTGTTGTTGAGGATATAATTAGTACTCCAAAGCTTGACATTTGCACCAAGTCCACTTCCAAATCATTGGAGATTGGTGAAAATCCAAGTTCATCTCAGAATGTTACAGGTGAACTTTTATCCCAAAACACTACAGGTGAACCTTCATATAAGAACTCTACTAATGATATTATGCCTTATAATGCTACTGATGAACCTTTACCTGAGCAAGAAGTGAAGGAATTCACTTGTCATTTCTGTAACAAGAAATTCTCCAATCCTCAAGCATTTGGAGGACATCAAAACGCTCATAAGCGTGAacgtgaattaaaaaaaattgaagatcaAAGGAgagaatatgaaataaattcAATCATAGGGATTAGATCTAGTAATCAAACATACCCTTATTCATTTTCAAGCCCATTTAACTATCAACAGTATTCTTATTTCCGTAATGCTAATTATCCCCACCCAATTAACACTCATATGAACAATACCATGACTTCTTGGGCTAATGGTTCTCCTTCTAGTGGCTATGGTGGGTTGTATATGCCAAATACAACCCCTACATCACCTCGATTTGTGATGCAAATGCCAAATTCATCCTTCACAACACCACAATTTGGGATGACTAATTTTTGGGGTGGAAATCAAAATGCTTCATTGCCAATTCCACAAAGGTCAAACACTTTCAATTTGGGGCTTTTTTCTCAAGCAAATCAAACCCCTTCAATTGCTGATGGTGCAGAAAGAAATGTCAATGCTCAACTTGGTTCTCAAACTCTTCAATTGTTACCTCATGATCCAATTAGAGAAGGACCAATTCAAGCTAATCTCAATGTGTCTTCATCATCAACTCAATCAACCTCAGATGAAGTTAACTTGGATCTCACcctttaa | 981 | 0.3619 | MGNGEDKKLKHRVEEKLEPRFENEPKTMPPSSQSVVEDIISTPKLDICTKSTSKSLEIGENPSSSQNVTGELLSQNTTGEPSYKNSTNDIMPYNATDEPLPEQEVKEFTCHFCNKKFSNPQAFGGHQNAHKRERELKKIEDQRREYEINSIIGIRSSNQTYPYSFSSPFNYQQYSYFRNANYPHPINTHMNNTMTSWANGSPSSGYGGLYMPNTTPTSPRFVMQMPNSSFTTPQFGMTNFWGGNQNASLPIPQRSNTFNLGLFSQANQTPSIADGAERNVNAQLGSQTLQLLPHDPIREGPIQANLNVSSSSTQSTSDEVNLDLTL | 326 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu04g00920 | 326 | Gene3D | Classic Zinc Finger | 93 | 159 | - | - | |
| Tsu04g00920 | 326 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
| Tsu04g00920 | 326 | SUPERFAMILY | beta-beta-alpha zinc fingers | 99 | 147 | IPR036236 | - | |
| Tsu04g00920 | 326 | MobiDBLite | consensus disorder prediction | 306 | 326 | - | - | |
| Tsu04g00920 | 326 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 110 | 130 | IPR013087 | - | |
| Tsu04g00920 | 326 | PANTHER | ZINC FINGER PROTEIN JAGGED | 65 | 326 | IPR045320 | GO:0003700 | |
| Tsu04g00920 | 326 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 108 | 135 | IPR013087 | - | |
| Tsu04g00920 | 326 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Tsu04g00920 | 326 | MobiDBLite | consensus disorder prediction | 54 | 89 | - | - | |
| Tsu04g00920 | 326 | Coils | Coil | 129 | 149 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu04g00920 | Tsu-Chr4 | 8784554 | 8785534 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu04g00920 | 64 | 147 | C2H2 Transcription Factor Family | AT5G27880 | 42.857 | 1.43e-11 | 62.4 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Tsu04g00920 | None | None | None |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu04g00920 | - | - | cam:101490368 | 253.062 |