Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00918 ATGAGCATAGCTGTTGAAGTTGTGGTGGCTCTTGGAGcagttttgtttggtttgatcCATTTTTTGCATGTTTTGGTTTTGAGACCAAAATCATTAAGATCAAAGCTTCATAAGCAAGGGATTCATGGCCCTTCTCCTCACTTCTACTTTGGTAATATTCAAGAAATGAAGACCCTTTTACTCCAACAACAAGAAAAACAAGCCAAACACAaacaagatgatgaagatgttTCTGTTTCTATATCTCATAATTGGACTTCATCTTTGTTACCTCATATTCACAAGTGGAGAAATCAATATGGTCCAATATACTTATTTTCTTCTGGGAGTATACAATGGTTAATGGTGGCAGATATGGACATGGTGAAGGAGATCCTCCTAAACACCTCTTTGGATCTAGGAAAGCCTTGTTATCTTTCCAAAGACATGGGACCACTCTTAGGCCAAGGTATAATATCCTCAAGTGGACCTATTTGGGCTCATCAGAGGAAGATAATTGCGCCTGAATTGTACCTAGACAAGGTCAAGGCAATGGTTGATCAGATAGTTGGCTCCACAAATATAATGCTAAGATCATGGGAGAGTAGAATAGAAAGAGACGGAGTAGTTTCAGAGATTAAAATTGATGAAGATCTGCAAAGCTTGTTAGCTGACATAATTTCTAGAGCTTGTTTTGGAAGCAATTACATCCAAGGAAAAGAAATATTCACAAAACTTAGAGATCTTAAAAAGGTCCTCTCCAAGATATATGCTGGAATTCCGGGCTTTAGATACTtgccaaacaaaaacaatagaCAGATATGGAGATTAGAGAAAGAGATCAACACAAATATATCAAAGCTCATAAAACAGCGCCAAGAAGAAGGTCATGAGCAAGATCTCTTGCAAATGATACTCGAGGGTGCCAAAAATTGTGAGGGAAGTGATGGCATCTTACCAAATTCAGTCGCACGAGACAGGTTCATTATAGATAACtgcaaaaatatattctttgCTGGACATGAACCTACTGCAACTACAGCTTCTTGGTGCTTAATGTTGTTAGCTACATACCAAGATTGGCAAGATCGTGCTCGTGCAGAGGTGCTTGAAGTTTGTGGAAATGGTAATCCAAATGAAAGTATGCTTAGAGGCATGAAAACATTAACCATGGTGATTCAAGAGACATTGAGGCTTCATCCAGCAGCAACATTTGTTGTCAGAACAGCTTTTCAAGATATTAACATGAAAGGCATCAAAGTTCCAAAAGGAATGAATATTCAGATTCCAATCTCAATATTGCAGCATGACATTGATCTTTGGGGCCCCGATGCCCACAAGTTCAATCCAGAAAGATTTGCGAATGGCGTGCTTAGAGCCTGCAAGATTCCACAAGCTTATATGCCATTTGGAATTGGCGCTCGTGTCTGTGCCGGACAGCATTTAGCCATGATAGAATTGAAGGTGATTTTGTCTctcattttgtcaaaatttcACTTCTCGCTTTCATCAAGTTACTGCCACTCCCCGGCCTTTTGTTTGCTTATAGAACCTGGTCATGGAGTTGTTCTTAAAATGACAAGAATTTGA 1569 0.3728 MSIAVEVVVALGAVLFGLIHFLHVLVLRPKSLRSKLHKQGIHGPSPHFYFGNIQEMKTLLLQQQEKQAKHKQDDEDVSVSISHNWTSSLLPHIHKWRNQYGPIYLFSSGSIQWLMVADMDMVKEILLNTSLDLGKPCYLSKDMGPLLGQGIISSSGPIWAHQRKIIAPELYLDKVKAMVDQIVGSTNIMLRSWESRIERDGVVSEIKIDEDLQSLLADIISRACFGSNYIQGKEIFTKLRDLKKVLSKIYAGIPGFRYLPNKNNRQIWRLEKEINTNISKLIKQRQEEGHEQDLLQMILEGAKNCEGSDGILPNSVARDRFIIDNCKNIFFAGHEPTATTASWCLMLLATYQDWQDRARAEVLEVCGNGNPNESMLRGMKTLTMVIQETLRLHPAATFVVRTAFQDINMKGIKVPKGMNIQIPISILQHDIDLWGPDAHKFNPERFANGVLRACKIPQAYMPFGIGARVCAGQHLAMIELKVILSLILSKFHFSLSSSYCHSPAFCLLIEPGHGVVLKMTRI 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00918 522 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 463 472 IPR017972 GO:0005506|GO:0016705
Tsu04g00918 522 PRINTS P450 superfamily signature 461 470 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g00918 522 PRINTS P450 superfamily signature 470 481 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g00918 522 PRINTS P450 superfamily signature 332 349 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g00918 522 PRINTS P450 superfamily signature 384 395 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g00918 522 SUPERFAMILY Cytochrome P450 85 520 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g00918 522 PANTHER CYTOCHROME P450 FAMILY PROTEIN 6 517 - -
Tsu04g00918 522 Gene3D Cytochrome P450 29 521 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g00918 522 PANTHER CYTOCHROME P450 FAMILY MEMBER 6 517 - -
Tsu04g00918 522 Pfam Cytochrome P450 93 497 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g00918 522 PRINTS E-class P450 group I signature 383 401 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g00918 522 PRINTS E-class P450 group I signature 460 470 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g00918 522 PRINTS E-class P450 group I signature 97 116 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g00918 522 PRINTS E-class P450 group I signature 215 233 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g00918 522 PRINTS E-class P450 group I signature 341 367 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g00918 522 PRINTS E-class P450 group I signature 470 493 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g00918 522 PRINTS E-class P450 group I signature 321 338 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00918 Tsu-Chr4 8772384 8775535 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00918 121 519 Cytochrome P450 AT5G24900 45.854 6.67e-127 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00918 K24544 - gmx:100780335 806.594