Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00912 ATGGGTATTTCTAGGAGTTCTTTGGTCAAGAGACGTGCCACTGGTGGCAAGCAGAAGCTCTGGAGAAAGAAGCGAAaGTATGAGCTTGGTCGTCAGCCAGCAAACACTAAGCTGTCAGGCAACAAGACAGTTAGAAGGATCCGTGTTAGGGGTGGCAATGTAAAATGGAGAGCTCTTAGATTGGACACTGGAAATTTTAGCTGGGGTAGTGAGGCAGTAACTCGCAAGACTCGTCTTCTTGATGTGGTTTACAATTCCTCAAATAATGAGCTTGTTAGAACTCAAACTCTCGTTAAGAGTGCTATTGTCCAAATTGATGCTGCACCATTCAAGCAGTGGTATCTTCAGCATTATGGTGTTGAAATCggtagaaaaaagaaaacagcttccAAGAAGGATTCTGCTGAGGAGGCTGAAGTTGTTGCTGAAGAAGTCAAGAAAAGTGATCACGTGCAAAGAAAACTTGAGCAGCGTCAAAAAGATAGACAACTTGATCCCCATATTGAAGAGCAGTTTGGCGGCGGCCGTTTGCTAGCCTGTATTTCATCTCGTCCAGGTCAATGTGGCCGATCTGATGGGTACATTCTTGAAGGTAAGGAGTTGGAATTTTACATGAAGAAATTACAGAAGAAGAAAGGAAAGGGTGCTActgcttaa 657 0.4186 MGISRSSLVKRRATGGKQKLWRKKRKYELGRQPANTKLSGNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRLLDVVYNSSNNELVRTQTLVKSAIVQIDAAPFKQWYLQHYGVEIGRKKKTASKKDSAEEAEVVAEEVKKSDHVQRKLEQRQKDRQLDPHIEEQFGGGRLLACISSRPGQCGRSDGYILEGKELEFYMKKLQKKKGKGATA 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00912 218 PANTHER 40S RIBOSOMAL PROTEIN S8 1 216 IPR001047 GO:0003735|GO:0005840|GO:0006412
Tsu04g00912 218 Pfam Ribosomal protein S8e 6 196 IPR022309 -
Tsu04g00912 218 ProSitePatterns Ribosomal protein S8e signature. 11 30 IPR018283 GO:0003735|GO:0005840|GO:0006412
Tsu04g00912 218 TIGRFAM eS8: ribosomal protein eS8 1 198 IPR001047 GO:0003735|GO:0005840|GO:0006412
Tsu04g00912 218 CDD Ribosomal_S8e_like 5 196 - -
Tsu04g00912 218 Gene3D - 27 212 - -
Tsu04g00912 218 Gene3D Ribosomal protein S8e, subdomain 108 175 IPR042563 -
Tsu04g00912 218 PANTHER 40S RIBOSOMAL PROTEIN S8 1 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00912 Tsu-Chr4 8733280 8736119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00912 1 205 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 82.439 7.64e-124 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00912 K02995 - gmx:100500112 368.622