Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00911 ATGGAAAATCAAttcttttcaaacaaaaatgttCCTTCAATGCCTACATGGCAAACACTTTCATCAtcagaacaacaacaaaaccaagATTGTTTTTACACACAAACAACATGGGAAAAATCAACAACAGATCAATGTATTCAACAATTTGATTCAGCACTAAGTTCAATGGTATCTTCACCTGCAGCATCAAATTCCAACAtgtcaaatgaaaattttgtcaTTAGAGAATTAATTGGTAAATTAGGAAACATTGGTAATTGTTCTGATGAGATCTCACAAACTTTAATTGCTGCAAATTCATACAATACTTCATGTTACAATACACCTTTAAATTCTCCACCTAAATTGAACATTCAAACAATGGCTATGAACTCAACTGTTGCAGAATTTTCAACTGATCCTGGTTTTGCAGAAAGAGCTGCTAAATTTTCTTGCTTTGGAAGTAGAAGTTTCAATGGAAGaacaacacaaacacaaacacaattgAATCAGACTCAAAGATCTACTCCATTAATGGAAAATGGAAAATTATCTAGAGTTTCAAGTAGTCCATCATTGAAAGAACTTGGATCTCAATCTCAAATTTGTATACAAGAGAATATGAATTGTTCATCTCAATTGCAGGATCAAATTGAAGTTAACAATAATTCTCAAGAAGAATCAACAATCTCTGAAAATGGTGTTAAACCTTCTCCTTATATGaattcaagaaaaagaaaagtatctTCCAAAGGAAAAACCAAAGAAAATTCAACTTCTAGTAACCCTCCAATGGCTTGTGAAGGTGTtgaagattcaaattcaaagagAATGAAAACAAATGAtggtgaaaaaattgaaaatggtaAAGTGAAAGCAGAGGAAGAGATAAAAGGGGGTACAAATAGTAATAATGGAGGTGATGAAAAACAGAATAAGAGTAACATAAAACCTCCTGAGGCTCCTAAGGATTACATTCATGTTAGAGCAAGAAGAGGTCAAGCTACTGATAGCCATAGTCTTGCAGAAAGAgTTAGGAGGGAGAAAATTAGTGAAAGAATGAAGCTTCTACAAGATCTTGTACCTGGTTGCAATAAGGTAACTGGGAAAGCACTCATGCTTGATGAAATTATAAACTATGTTCAATCATTGCAGCGCCAAGTTGAGtTTCTATCTATGAAATTGGCTACTGTGAACACAAGGGTGGATTTAAGTATTGAGAGTCTAATCTCAAAAGATaTATTTCAATCAAATAATTCTTTGGCACACCCAATATTCCCACAAGATTCCTCAGCACCATCCTATTATGGGCAGCAAAACCCAGCAATTCACAATAACATTTCTAATGGAAATGTGACCCACAACTCAGTGGACCCATTAGAAAATGGTTTATTCCAAAACATTGGCATGCACTTATCTTCATTAAGTGGATTTAATGATGCTGGTTCTCAGtaTCCATTAACATTCTCTGAGGATGATCTACACAGCATTGTTCAAATGGGATTTGGGCAAACTGACAATAGAAAAACACCAATACAATTTCAGAATTTGAACGGCACTAATCAACTACCCCTATGA 1560 0.3141 MENQFFSNKNVPSMPTWQTLSSSEQQQNQDCFYTQTTWEKSTTDQCIQQFDSALSSMVSSPAASNSNMSNENFVIRELIGKLGNIGNCSDEISQTLIAANSYNTSCYNTPLNSPPKLNIQTMAMNSTVAEFSTDPGFAERAAKFSCFGSRSFNGRTTQTQTQLNQTQRSTPLMENGKLSRVSSSPSLKELGSQSQICIQENMNCSSQLQDQIEVNNNSQEESTISENGVKPSPYMNSRKRKVSSKGKTKENSTSSNPPMACEGVEDSNSKRMKTNDGEKIENGKVKAEEEIKGGTNSNNGGDEKQNKSNIKPPEAPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLATVNTRVDLSIESLISKDIFQSNNSLAHPIFPQDSSAPSYYGQQNPAIHNNISNGNVTHNSVDPLENGLFQNIGMHLSSLSGFNDAGSQYPLTFSEDDLHSIVQMGFGQTDNRKTPIQFQNLNGTNQLPL 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00911 519 Coils Coil 375 395 - -
Tsu04g00911 519 MobiDBLite consensus disorder prediction 212 316 - -
Tsu04g00911 519 MobiDBLite consensus disorder prediction 1 20 - -
Tsu04g00911 519 MobiDBLite consensus disorder prediction 212 232 - -
Tsu04g00911 519 Pfam Helix-loop-helix DNA-binding domain 332 379 IPR011598 GO:0046983
Tsu04g00911 519 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 328 378 IPR011598 GO:0046983
Tsu04g00911 519 PANTHER BHLH TRANSCRIPTION FACTOR 15 515 - -
Tsu04g00911 519 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 326 396 IPR036638 GO:0046983
Tsu04g00911 519 MobiDBLite consensus disorder prediction 292 306 - -
Tsu04g00911 519 SMART finulus 334 384 IPR011598 GO:0046983
Tsu04g00911 519 MobiDBLite consensus disorder prediction 266 291 - -
Tsu04g00911 519 MobiDBLite consensus disorder prediction 248 262 - -
Tsu04g00911 519 MobiDBLite consensus disorder prediction 153 186 - -
Tsu04g00911 519 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 15 515 IPR024097 GO:0006355
Tsu04g00911 519 Gene3D - 325 400 IPR036638 GO:0046983
Tsu04g00911 519 CDD bHLH_AtBPE_like 318 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00911 Tsu-Chr4 8702488 8706147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00911 1 485 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 46.032 1.90e-108 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu04g00911 HLH 4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00911 - - mtr:MTR_7g053410 874.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g00911 04 8702488 8706147 Tsu08g00283 08 2717510 2721375 PCT