Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00905 ATGGCAAAACCAGGTGTGTTAGATTCTGATCCAGAGATTATGGTGAAGAAAGCGATAGAGTTAAAGAAGGAGTTGAAAAAGCTTGTGAAGTCCattgttgatgatgaagataTAAACATTGAAGCTATTGAGAAAGCTAAAGAAATTCTTTGTGTTCTTAAGGATTTGAAGCTAAGAAAGAAATCTCAATCTTCAATGTCTTTTAAGATAAACAAGAATGTTAATTTTCCAGATGAATTCAAATGTCCACTTTCCAATGAATTGATGAGAGATCCTGTCATTGTTTCTTCTGGTCAGACATATGATAGACCTTTCATTCAAAAATGGATTAATGCTGGAAATAGAACATGCCCTCAAACTCATCAAGTTCTCTCACACACATTTCTTACTCCAAATCACCTCATAAgagaaatgatagaaaaatggTCTAAAAATCAAGGACTTGAATTGTGCAATGTTATTAGTTATATTAATGATGAAGGTGCTAAAGAAGCTGATCAGAATCACTTTTTATGTTTGCTTGAGAAAATGTCATCAACACTTAGTGATAAAAAAGAAGCTGCGAAACAACTTAGATTGTTGACAAAGAAGCATCCTTGTTTTCGAGTGCTTTTTTGCGATTTTGAAAACGCAATTCCTCAATTGCTTAAGCCAATTTGTGAAGGAGATAGTATTAATCATGATCTTCAAGAAGATGTGATTACAACACTTCTCAATATCTCGATTCATGACAACAATAAGAAACTAGTAGCTGAAACTCCGATGGTAATTCCAATCCTTATGAAGGCATTAAGATGTGGAACAATCGAAACACGAGCCAATGCTGCAGCAACCCTTTTCACGTTATCAGCACTAGACTCAAACAAAGAACTTATTGGAAAATCGAATGCCTTAAAACCGCTTATCGACCTATTGGAAGAAGGGAATCCCTTAGTCATGAAAGATGTTGCTTCAGCAATTTTCACTTTATGTATGATGCATGACAACAAGGCAAGAGCAGTGAAAGACGGCGCAGTTAGAGTCATCATGACGAAGATGAAAAACCGACTTCACGTCGATGAATTGCTAGCTATCCTTGCACTACTTTCAACTCATCAGAAGGCTGTTCTTGAAATGGCCGAGCTCGGAGCTGTTCCTTGCTTGCTAAGCATCATGCGAGAGAGCTCGTGCGAACGCAATAAGGAGAATTGCGTAGCGGTCCTTCAAACTATATGTCTTTATGATAGATCCAAGTTGAGGGAAATAAAGGAAGAGGAGAATAGTTACAGAACAATATCTGAACTTGCAAAGAGTGGAACTTCAAGGGCTAAGAGGAAAGCTAGTGGAATTCTTGAGAGGTTGCATAGGGTTGTTAATATCACACACACTGCATAA 1374 0.3639 MAKPGVLDSDPEIMVKKAIELKKELKKLVKSIVDDEDINIEAIEKAKEILCVLKDLKLRKKSQSSMSFKINKNVNFPDEFKCPLSNELMRDPVIVSSGQTYDRPFIQKWINAGNRTCPQTHQVLSHTFLTPNHLIREMIEKWSKNQGLELCNVISYINDEGAKEADQNHFLCLLEKMSSTLSDKKEAAKQLRLLTKKHPCFRVLFCDFENAIPQLLKPICEGDSINHDLQEDVITTLLNISIHDNNKKLVAETPMVIPILMKALRCGTIETRANAAATLFTLSALDSNKELIGKSNALKPLIDLLEEGNPLVMKDVASAIFTLCMMHDNKARAVKDGAVRVIMTKMKNRLHVDELLAILALLSTHQKAVLEMAELGAVPCLLSIMRESSCERNKENCVAVLQTICLYDRSKLREIKEEENSYRTISELAKSGTSRAKRKASGILERLHRVVNITHTA 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00905 457 PANTHER U BOX DOMAIN-CONTAINING 5 455 - -
Tsu04g00905 457 Gene3D - 151 452 IPR011989 -
Tsu04g00905 457 SMART arm_5 365 406 IPR000225 GO:0005515
Tsu04g00905 457 SMART arm_5 285 325 IPR000225 GO:0005515
Tsu04g00905 457 SMART arm_5 243 284 IPR000225 GO:0005515
Tsu04g00905 457 SMART Ubox_2 79 142 IPR003613 GO:0004842|GO:0016567
Tsu04g00905 457 SUPERFAMILY ARM repeat 178 447 IPR016024 -
Tsu04g00905 457 Pfam U-box domain 77 145 IPR003613 GO:0004842|GO:0016567
Tsu04g00905 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 150 IPR013083 -
Tsu04g00905 457 CDD RING-Ubox_PUB 80 122 IPR045210 -
Tsu04g00905 457 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 5 455 - -
Tsu04g00905 457 ProSiteProfiles U-box domain profile. 75 149 IPR003613 GO:0004842|GO:0016567
Tsu04g00905 457 SUPERFAMILY RING/U-box 74 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00905 Tsu-Chr4 8638981 8642026 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00905 138 457 U-box Gene Family AT3G07360 60.000 1.42e-127 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00905 - - gmx:100777031 689.108