Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00901 ATGAAGttCAATGTTGCAAATCCCACCACTGGTTGCCAGAAGAAGCTCGAGATCGATGATGATATGAAACTACGAGCATTTTGGGACAAGAGGATTTCACAAGAAGTCAGTGGAGATGCACTTGGCGAGGAATTTAAAGGCTACGTCTTTAAAATTACCGGAGGATGCGACAAGCAAGGCTTTCCGATGAAGCAGGGAGTGCTGACCCCTGGCCGTGTTCGCCTTTTGCTTCACAGGGGAACACCTTGCTTCCGCGGATATGGAAGGCGTAATGGAGAGCGTAGAAGGAAGTCTGTTCGTGGATGCATTGTTAGCCCTGACCTCTCTGTTCTGAACTTGGTAATTGTGAAGAAGGGTGAGAATGATTTACCTGGCCTGACTGATGTTGAGAAGCCAAGGATGAGAGGTCCAAAGAGAGCATCCAAAATCCGTAAGCTGTTCAACTTGTCTAAGGAGGATGATGTGAGGAAGTATGTCAACACCTACCGTAGGACATTTACAACCAAAGCTGGCAAAAAGGTCAGCAAAGCTCCCAAGATACAAAGACTGGTTACTCCTCTTACACTCCAAAGAAAGCGAGCAAGAATCGCCGACAAGAAGAAGAGAATTGCCAAGGCAAAATCAGAGGCAGCTGAGTACCAGAAGCTTCTTGCTTCCAGATTGAAGGAGCAGAGAGAACGTCGCAGTGAGAGTTTAGCAAAAAAGAGATCCAGGATTTCAAGTGCTACTAAGGCACCAGTTACTGCATAA 750 0.4653 MKFNVANPTTGCQKKLEIDDDMKLRAFWDKRISQEVSGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKAGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKKRSRISSATKAPVTA 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00901 249 ProSitePatterns Ribosomal protein S6e signature. 52 63 IPR018282 GO:0003735|GO:0005840|GO:0006412
Tsu04g00901 249 Gene3D - 133 234 - -
Tsu04g00901 249 PIRSF RPS6e 1 249 IPR014401 GO:0003735|GO:0005840|GO:0006412
Tsu04g00901 249 Coils Coil 189 216 - -
Tsu04g00901 249 MobiDBLite consensus disorder prediction 219 237 - -
Tsu04g00901 249 PANTHER 40S RIBOSOMAL PROTEIN S6 1 249 IPR001377 GO:0003735|GO:0005840|GO:0006412
Tsu04g00901 249 Pfam Ribosomal protein S6e 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Tsu04g00901 249 SMART Ribosomal_S6e_2 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Tsu04g00901 249 MobiDBLite consensus disorder prediction 219 249 - -
Tsu04g00901 249 PANTHER 40S RIBOSOMAL PROTEIN S6 1 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00901 Tsu-Chr4 8613489 8616175 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00901 1 249 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 73.092 2.59e-122 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00901 K02991 - gmx:100786559 436.802