Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00888 ATGGAGGCTATCAACAATGGTGAAATTGAAACACACCAATATTTTGTCCCAATAAAAGTGAGTTCTAGACTTAAAAATCAGCCAAAGATTCATTATGATATTTACCACAATAATGGTAACAAATTTGTTGTCCATGCCCAGCAACATGATCAAAAGAGAGATATGAATTTTGAAGAGTATTCTATTGATGAAAAGAGAGATATGAATTTTGAAGAGTATTCCATTGAGAAGAGAATAAAGCTCGACCCCTCCTTAGAGCAAAATAAAACATTGGTTTCAAAAATAGATGAAAgtggtttatttgtttttgatgAACTTGACATGAGGGGCATTTTGGCCTTAAAAGAAACTTTTAGACTTGCCAATCTTCGTAGTCTTGCTAAGCAAGAAAAGAATCAAAGCAAAAATCTACGAAAGAAGATGCATAATAAAAAGAATGCTGACACATTTTTTATGTCTAGCAAGgttgataaaaataaaaatggcatTGATGGTGAGTACATGCCTGGAGTCACAACATCAAGATATCTAATCAATAAGCTTCAAGAATTGGCTAAAGTTGGTATAGATAAGGTTAATTTTATGAAAGGACAAGTCTCTATTgctctttcttcttctccaagTTTGGTATGCAAGGACATTAGTGATGGAAAAGAAGCTATCAACATCATTGCAACCAATGAATTCGACGATCCTCCAGTTGCACCTACAGgtttTACATATATTATAGCAAATCAAGTTGCAAAACACGTTAACGTTCCGTCCAGGATTTCTGGATGTCATTGCCAAGGAAGTTGCAGAAATATTAAAACGTGTTCTTGTGCTAAATATATTAAAGGCTCTAAGTTTCCATACAGTAATATTGGCAGattgatTGAACCTCGGGACATCGTAGTCGAATGTGGACCACAATGCGGGTGTGAACCTAATTGTGGAAATAAAATTTCCCAAAAGGGTTTAAAATATCGACTTGAAGTTTATCGTACAACCAAGAAAGGTTGGGCTGTGAGAACATGGGACTTTATCCCCTCAGGTGCACCGGTAATAGAATATATTGGTGTACTCGATAGGGATGATAAGTTAGATAATTCTATTGAAAATGACTACATATTTGATATTGATTGTTTACACACAATCAATGAGTTAGATGGAAGAGAGcGACGGTTGGGTGGTGTATCACTCCCTACTAAAGAAATTTCTGAAAAAATGGACAAGTATATTAAAAATGATCCTGAGTTTTGTATAGATGCTGGTTCTTTTGGTAATGTTTCAAGATTTATCAATCATGGATGTACACCAAACCTCTTTGTACAATGTGTTCTTAGTAACCACCTAGATGTTAAACTAGCTCGTGTGATGTTATTTGCAGCACAAGACATACCTCCCTATCAGGAACTCACCTATGACTATGGTTATAGACTTGATAGTGTGGTTGGTCCTGATGGAAATATTAAGCAATTGCAATGTCATTGTGGTTCAGAGGAATGTCGTAAGCGCTTGTACTAA 1506 0.34 MEAINNGEIETHQYFVPIKVSSRLKNQPKIHYDIYHNNGNKFVVHAQQHDQKRDMNFEEYSIDEKRDMNFEEYSIEKRIKLDPSLEQNKTLVSKIDESGLFVFDELDMRGILALKETFRLANLRSLAKQEKNQSKNLRKKMHNKKNADTFFMSSKVDKNKNGIDGEYMPGVTTSRYLINKLQELAKVGIDKVNFMKGQVSIALSSSPSLVCKDISDGKEAINIIATNEFDDPPVAPTGFTYIIANQVAKHVNVPSRISGCHCQGSCRNIKTCSCAKYIKGSKFPYSNIGRLIEPRDIVVECGPQCGCEPNCGNKISQKGLKYRLEVYRTTKKGWAVRTWDFIPSGAPVIEYIGVLDRDDKLDNSIENDYIFDIDCLHTINELDGRERRLGGVSLPTKEISEKMDKYIKNDPEFCIDAGSFGNVSRFINHGCTPNLFVQCVLSNHLDVKLARVMLFAAQDIPPYQELTYDYGYRLDSVVGPDGNIKQLQCHCGSEECRKRLY 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00888 501 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH4 109 500 - -
Tsu04g00888 501 SUPERFAMILY SET domain 206 477 IPR046341 -
Tsu04g00888 501 Pfam Pre-SET motif 214 314 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tsu04g00888 501 SMART set_7 322 477 IPR001214 GO:0005515
Tsu04g00888 501 ProSiteProfiles Post-SET domain profile. 485 501 IPR003616 -
Tsu04g00888 501 SMART preset_2 211 306 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tsu04g00888 501 Pfam SET domain 333 471 IPR001214 GO:0005515
Tsu04g00888 501 Gene3D SET domain 204 501 IPR046341 -
Tsu04g00888 501 ProSiteProfiles SET domain profile. 322 471 IPR001214 GO:0005515
Tsu04g00888 501 SMART PostSET_3 485 501 IPR003616 -
Tsu04g00888 501 Coils Coil 120 147 - -
Tsu04g00888 501 ProSiteProfiles Pre-SET domain profile. 258 319 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tsu04g00888 501 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 109 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00888 Tsu-Chr4 8517877 8522763 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00888 104 501 EF-hand Containing Proteins AT5G13960 48.756 2.55e-127 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tsu04g00888 SET 6.4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00888 - K11420 mtr:MTR_7g052480 616.305