Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00870 ATGTATGTCTTGATGACACAAATTGGGCAGGTTTGTATGGATTTCGTAGAAGTGGATCCGGACAAGGGAAACGAGGTTGCTCATAGCTGTCTAGAAGAGActacaaatatatttgatggagtTGAAGTTCAAGAGCCATATGTGGGCATGGAATTTGATTCTGAAGAAACTGCCAGAAAATTTTATGTTGCATATGCTAGACGGGTAGGATTTGATGTACGTGTTATGCAACGTCGACGTTCTGGAATTGATGGCAGGACTCTTGCCCGTCGACTTGGATGTAACAAGCAAGGATTCTCACCCAATAACAAGGGAACATTGGGGAAAGATAAAAGACCAAGGTCTAGTGCCCGAGAAGGTTGCAAGGCAACAATTTTAGTTAAGATGGAAAAATCTGGAAAATGGGTTGTCACAAGATTTATAAAGGATCACAACCATCCTCTAATTGCTACAGCTAATGGTTTCGGTACAGAGGatgaaaaagataagaaaatTGCAGAACTTACTATGGAGTTGGAGCACCAAGATGAACTATGTGCCGCATATAGAGAAAAATTACTTAGCTTCATAAACAATGTTGAGGAGCAAACAGAAGAAATGTCCACAAGAATTCAACTCATTATTACAAATATAAAGAGAGCTGAATCTGAAATGCAAATATGTTCACAGAACAGATAG 678 0.3776 MYVLMTQIGQVCMDFVEVDPDKGNEVAHSCLEETTNIFDGVEVQEPYVGMEFDSEETARKFYVAYARRVGFDVRVMQRRRSGIDGRTLARRLGCNKQGFSPNNKGTLGKDKRPRSSAREGCKATILVKMEKSGKWVVTRFIKDHNHPLIATANGFGTEDEKDKKIAELTMELEHQDELCAAYREKLLSFINNVEEQTEEMSTRIQLIITNIKRAESEMQICSQNR 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00870 225 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 15 222 - -
Tsu04g00870 225 Coils Coil 165 185 - -
Tsu04g00870 225 MobiDBLite consensus disorder prediction 96 117 - -
Tsu04g00870 225 Pfam FAR1 DNA-binding domain 60 149 IPR004330 -
Tsu04g00870 225 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 15 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00870 Tsu-Chr4 8354052 8356280 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu04g00870 FAR1 1.4e-29 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00870 - - vun:114183030 352.829