Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00868 ATGGGTGGTGTGGATAATAGAAAGTGGATAGATTTgtttaagaagaaaaagaagaacaagaatGGGTCTATATGGTCCATTTTCATGCATGCTGATGGGGAAGATTGGTTCCTTATGGTTTTAGGTACTATTGGAGCAATTGGTGAAGGCTTCACCTTTCCTTTGATTTTGTATATTAGTAGCCGCATGATCAATAATATTGGGAGTTCATCTTCCATGGAACCAAACACTTTCATCCATAACATCAATAAGAATGCACTTGCTTGGTTATATTTGGCCTGTGCATCCTTTGTTATTTGTTTCCTTGAGGGTTATTGTTGGACAAGGACAAGTGGGAGACAAGCTTCAAGAATGAGATGCAAGTACCTTAAAGCAGTTCTTAGACAAGAAGTTTCTTACTTTGATTTGCAGGTCACAAGTACCTCAGAAATCATCACAAGTGTCTCTAATGACACACTTATAATTCAAGATGTTCTTAGTGAAAAGgttcCAAATTTATTGATGAACATTTCATTGTTCATTGGGTGCTATATAGTGGCATTTGCAATGCTATGgagattggcaattgtagtaTTCCCATTTTTAATTCTTCTAGTAATCCCTGGATTAATCTATGGCATGACATTGATGAATTTATCAAGCAAGATAAGAGAAGAGTACAATCAAGCTGACACAATAGCTGAACAAACAATATCTTCAATTAGAACTGTTTATTCATTTGTGGGAGAAAACAAATCTATGAATGCTTTCTCTAATGCATTACAAGGGACTGTTAATTTGGGATTAAAACAAGGATTAGCTAAAGGTTTAGCTATTGGAAGCAATGGTTTTGTGTTTGCAATTTGGTCTTTTATGTGTTATTATGGAAGTAGATTGGTGATGTATCATGGTGCTAAAGGAGGGACAGTTTTTGCTGTTGGGGCAACCATAGCACTTGGTGGATTAGGATTAGGAACAAGTTTATCAAGCCTAAGGAATTTTTCAGAAGCAAGTTCAGCAGGTGAAAGAATCAAGAGAGTAATATCAAGAATTCCAAACATAGATTCCAATAATCCAAAAGGagaaatattagaaaatatttcagGAGAAGTTGAATTTAACAACATAGAATTTTCATATCCAACAAGACCAGAAACAATTATCCTTAAAAACTTATGTCTCAAAATTCCAGCAAGAAAAACAGTTGCATTGGTTGGTGAAAGTGGTTCAGGAAAATCAACATTAATAGCTTTATTGCAAAGATTTTATGATCCAATATGTGGTGAGATACTTGTTGATGGTGTGGCTATAAATAAGTTGAATATTAAGTGGCTAAGATCAATTATGGGGTTGGTTAGTCAAGAACCTTCTTTGTTTGCAACAAGTATTAAAGAGAATATAATTTTTGGTAAGGAAGATGCTACTGAAGATGAGATTGTTGAAGCTGCTAGAATTTGTAATGCTCATGATTTCATTTCATTGCTTCCTCAAGGTTACAATACTCAGGTGGGCGAAAGAGGGGTTCAATTATCAGTTGGACAAAAACAAAGGATAGCAATTGCTCGAGCAATAATCAAGAAACCAAGAATCCTTCTTTTGGATGAAGCAACGAGCGCCTTAGACACTAAATCAGAACGACTCGTTCAACAAGCTCTCGACCATGCAACAATCGGCTACACCACCATTGTAATTGCCCACCGCCTATCCACAATCCAGAAAGCCGACATAATTTCCGTTGTGCATGGTGGAAAAATCACCGAGATTGGCTCACACAACGAACTTCTCCAAAACAACACAGGCACCTACACCTCACTTGTCTGCAACCAACAAACCGATAAGGAAGAAGCTGAAGAAGAAACCGTTACAACTACTTTCACTAAAATAGACCCACAAATCACGTGTTTTGTGGATCCGACCACTTTAGTGGAAGAcgaaaaaaacaatattaataacGTTAATGTCAATGAACTTAAAACGGTGTCGTTTTGGAGATTACTTTTATTAAATATTCCTGAATGGAAACAAGcagtttttgggtgtttgaatGCAATGGTATTTGGTGCGGTTCAACCGGTTTATGCATATACAATAGGGTcaatgatatttatttattttaatacagATTATGAGGAGATAAAAAACAAGACTAAGGTCTATTCGCTTTGCTTTTTGGGTCTCTTTGTGATAACTTTGGTGGTTAATGTTGGACAACATTATAACTTTGCATATATGGGAGAGTATTTGACTAAACGTGTGAGGGAAAGTATGCTTTCTAAGATAATCACTTTTGAAGTTGCTTGGTTTGATCGTGATGAAAATTCTAGTGGTGCTATTTGTTCTCGACTTGCCAATGATGCTAATGTGGTGAGGTCATTAGTTGGTGATAGAATGTCTTTGTTGGTTCAAACCTTTTCAGCAGTAATCACGGCTTACACTATGGGTCTAGTCATTTCATGGAGGCTCAACATAGTTATGATATCTATTCAACCAATTTTAATAGCATGCTTTTATACAAGAAGTGTGTTACTCAAAAGCATGTCAAGCAAATCCACTAAGGCCCAACAAGAAAGTAGTAAGTTAGCTTGTGAAGCTGTTTCAAATCTTAGAACTATCACTGCCTTTTCTTCACAAGATAGAATACTCAAAATGCTTGAAATGGCCCAACAAGGCCCAATTCAAGAGAATTTTCGACAAGCATGGTTCGCGGGTATTGGACTTGGGCTTTCGCAATTTCTCATGTCTTGTACTTGGGCCGTGAATTATTGGTACGGTGGCAAGCTTATTGTTGATGGGTACATAACAAAGAAAGCGTTGTTTGAGAGCTTTATGGTTGTGGTGAGTACAGGACGGGTTATAGCTGATGCTGGAAGCATGACTAAAGATCTTGTCAACGGTGCTGATGTTGTGAGCTCGATTTTTGCCATCTTAGATCGACGTACAAAAATCGACCCAGACGACCCTAGTGGGTTTAAGCCCGAGGCTTTAATGGGCCAAATAGAATTTCACAACGTGCATTTTTCATACCCTACTAGGCCCAATGTAGTTATCTTTGAagatttttcaattaaaattgaaGCGGGAAAATCAACGGCATTAGTGGGCCAAAGTGGGTCCGGAAAATCAACCATCATAGGATTAATCGAGAGATTCTACGACCCATTTAAAGGAAGTGTGACtatagatgatatgaacatAAAATCATATAACCTAAAGTCACTAAGAAAACGCATAGCACTTGTGAGCCAAGAGCCAACATTGATCAATGGGACCATAAGAGACAACATTGCATATGGAACAACATGTGACAACATTGATGAAATTGAGATCATAGAGGCAGCAAGAGTAGCCAATGCTCATGATTTCATATCTAGCTTAAAAGATGGGTATGAGACATGGTGTGGTGACAAAGGGGTGCAACTTTCAGGAGGTCAAAAACAAAGGATAGCAATAGCTAGAGCCATGTTGAAGAATCCAAAAGTGTTACTATTAGATGAGGCAACAAGTGCACTAGATAATAATTCAGAAAAGGTAGTGCAAGATGCATTGAATAAGGTAATGGTGGGAAGAACAAGTGTGGTTGTGGCACATAGGTTGAGTACCATACACAATTGTGATGTTATTGCTGTTTTAGATAAAGGGAAAATGGTTGAGATTGGAAGTCACAAAACTTTGTTGGCTAAAGGACCTTGTGGTGCTTATTACTCTTTGGTACATCTTCAAACAAAACATGCATCTACAACCAAAGACACTACTATAATTAATGTATAG 3747 0.3616 MGGVDNRKWIDLFKKKKKNKNGSIWSIFMHADGEDWFLMVLGTIGAIGEGFTFPLILYISSRMINNIGSSSSMEPNTFIHNINKNALAWLYLACASFVICFLEGYCWTRTSGRQASRMRCKYLKAVLRQEVSYFDLQVTSTSEIITSVSNDTLIIQDVLSEKVPNLLMNISLFIGCYIVAFAMLWRLAIVVFPFLILLVIPGLIYGMTLMNLSSKIREEYNQADTIAEQTISSIRTVYSFVGENKSMNAFSNALQGTVNLGLKQGLAKGLAIGSNGFVFAIWSFMCYYGSRLVMYHGAKGGTVFAVGATIALGGLGLGTSLSSLRNFSEASSAGERIKRVISRIPNIDSNNPKGEILENISGEVEFNNIEFSYPTRPETIILKNLCLKIPARKTVALVGESGSGKSTLIALLQRFYDPICGEILVDGVAINKLNIKWLRSIMGLVSQEPSLFATSIKENIIFGKEDATEDEIVEAARICNAHDFISLLPQGYNTQVGERGVQLSVGQKQRIAIARAIIKKPRILLLDEATSALDTKSERLVQQALDHATIGYTTIVIAHRLSTIQKADIISVVHGGKITEIGSHNELLQNNTGTYTSLVCNQQTDKEEAEEETVTTTFTKIDPQITCFVDPTTLVEDEKNNINNVNVNELKTVSFWRLLLLNIPEWKQAVFGCLNAMVFGAVQPVYAYTIGSMIFIYFNTDYEEIKNKTKVYSLCFLGLFVITLVVNVGQHYNFAYMGEYLTKRVRESMLSKIITFEVAWFDRDENSSGAICSRLANDANVVRSLVGDRMSLLVQTFSAVITAYTMGLVISWRLNIVMISIQPILIACFYTRSVLLKSMSSKSTKAQQESSKLACEAVSNLRTITAFSSQDRILKMLEMAQQGPIQENFRQAWFAGIGLGLSQFLMSCTWAVNYWYGGKLIVDGYITKKALFESFMVVVSTGRVIADAGSMTKDLVNGADVVSSIFAILDRRTKIDPDDPSGFKPEALMGQIEFHNVHFSYPTRPNVVIFEDFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPFKGSVTIDDMNIKSYNLKSLRKRIALVSQEPTLINGTIRDNIAYGTTCDNIDEIEIIEAARVANAHDFISSLKDGYETWCGDKGVQLSGGQKQRIAIARAMLKNPKVLLLDEATSALDNNSEKVVQDALNKVMVGRTSVVVAHRLSTIHNCDVIAVLDKGKMVEIGSHKTLLAKGPCGAYYSLVHLQTKHASTTKDTTIINV 1248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00868 1248 ProSitePatterns ABC transporters family signature. 503 517 IPR017871 GO:0005524
Tsu04g00868 1248 Gene3D - 354 609 IPR027417 -
Tsu04g00868 1248 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 602 IPR027417 -
Tsu04g00868 1248 Pfam ABC transporter 382 531 IPR003439 GO:0005524
Tsu04g00868 1248 Pfam ABC transporter 1011 1161 IPR003439 GO:0005524
Tsu04g00868 1248 SUPERFAMILY ABC transporter transmembrane region 657 977 IPR036640 GO:0005524|GO:0016021
Tsu04g00868 1248 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 26 1238 IPR039421 -
Tsu04g00868 1248 Pfam ABC transporter transmembrane region 672 939 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu04g00868 1248 Pfam ABC transporter transmembrane region 39 306 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu04g00868 1248 CDD ABC_MTABC3_MDL1_MDL2 992 1233 - -
Tsu04g00868 1248 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 983 1233 IPR027417 -
Tsu04g00868 1248 ProSitePatterns ABC transporters family signature. 1133 1147 IPR017871 GO:0005524
Tsu04g00868 1248 SMART AAA_5 391 579 IPR003593 -
Tsu04g00868 1248 SMART AAA_5 1019 1213 IPR003593 -
Tsu04g00868 1248 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 364 600 IPR003439 GO:0005524
Tsu04g00868 1248 CDD ABC_6TM_Pgp_ABCB1_D1_like 39 306 - -
Tsu04g00868 1248 CDD ABC_6TM_Pgp_ABCB1_D2_like 659 975 - -
Tsu04g00868 1248 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 992 1230 IPR003439 GO:0005524
Tsu04g00868 1248 SUPERFAMILY ABC transporter transmembrane region 28 348 IPR036640 GO:0005524|GO:0016021
Tsu04g00868 1248 Gene3D - 982 1244 IPR027417 -
Tsu04g00868 1248 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 40 329 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu04g00868 1248 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 26 1238 - -
Tsu04g00868 1248 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 676 957 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu04g00868 1248 Gene3D ABC transporter type 1, transmembrane domain 26 955 IPR036640 GO:0005524|GO:0016021
Tsu04g00868 1248 CDD ABC_MTABC3_MDL1_MDL2 364 602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00868 Tsu-Chr4 8339626 8347239 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00868 15 1233 Calmodulin-binding Proteins AT2G36910 42.708 0.0 1025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00868 K05658 - gmx:100809399 1758.42