Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00867 atggctttCACAGTTTCACACTTTTTTCTAGTCTTCATGCTAATTCACTTCCAATATTGTTCATGTTATTTAACATCATTGAAAAAGGGTTCATCTCTATCAGTAAAGAAATATGAAGAAGATGTAATTGTTTCTTCAAATGGAATATTCTCTGCTGGCTTCTATCAAATTGGAGAAAATGCATTTTCTTTCGCCATATGGTTCACAGAGCTGCAAAATCACAGTCATGACCCAGCCAATATTGTATGGATGGCAAACCGTGAACAACCTGTGACTGGTGAGCTTTCAAAGCTTTTCCTCTTAAACACAGGTAACATCCTCTTGCTTGATGAAGGTCAACACAATATTTGGTCTTCAAACACAGCATCAAATGCACCATTAGAGTTGTATCTCAAAGATGATGGTAATCTTGTGTTACGTGAGCTTCAAGGAACTACCATCTTGTGGCAAAGCTATGATTTTCCAACAAATACTCTCCTTCCTAATCAACCTCTCACTAGATACATAAAACTTGTTTCTTCAAGAAGCCAAAGTAATCATTCTTCTGGCTTCTATAAGTTGTTATTTGATGATGACAATGTTATTCGTCTCGACTATCATGGTGATGTTTTAAGCACATATTGGCCTCCACATTGGTTGTTAAGCTCGGAAGCTGGAAGATTCAATTACAATAGTAGTAGAATTGCTATGTTGGATTCTTTTGGGAAGTTCTTTTCCTCTGATAACTACTCTTTTTCCACATATGATTATGGTATGATTATGCAAAGAAGATTAACCATTGATTCTGATGGTAATATTCGAGTTTATAGTCGAAAAAACTGGTCAGAAAATTGGTATGTTTCATGGCAAGTCATATCTGATACTTGCATCATTCATGGACTTTGTGGTGAAAATAGCAGTTGTAGCTATGATTCTAAAAAGGGTAAGAAATGTTCTTGTTTGCCCGGGTATAAAGTGACGAACGATAGTGATTGGTCTTATGGTTGCAAACCTATGTTTGATTTTACTTGCAATAGAAGTGAGTCTACTTTTTCTAAATTACATGGTTTTGAGTTCTATGGTTATGACAGTAATTCTGTTAAAAACATTACCTACAAAAATTGTGAGAGTTTATGTTTACAAGATTGTTACTGTAAAGGGTTCCAATACACATATGCAGATAACATCTTCAAATGCTATACAAAGCTACATTTGATGAATGGGAGGTATTCACCAAGTTTAATCGGAGAAATTTACTTGAGACTTCCAAAAGGTAATAACTTCTCTAAAGAAGAGACTATGAGTGTAAAAGATCATATTTGTCAGGTGGAACTTCACAGAGACTTTTCTAGAAAACCAACAAGTCACATGATAAAGTTTTTTCAATGGCTTGCAATTGCAGTTGGAGGTTTAgaatgtgtttgtttttttgtgtttttatttatcaacaaaaagagTAGTGAAGATAAACATAGCCATCATCATGCATTGGGATTCAGAAGATATAGTTACTCTGAGTTGAAGTTAGCAACAAAGAATTTCAGTAATGAGATTGGAAGAGGTGGAGGAGGGGTTGTATATAGAGCTACATTGTCAGATCAAAGACATGCAGCAGTAAAGAGATTGTATGAAGCTAAACAAGGAGAAAGAGAGTTTCTTGCTGAAGTAAGCATCATTGGAAGGCTTAACCACATGAATTTGATTGAAATGTGGGGATATTGTGTTGAAGGTAAGCATAAACTCTTGGTATATGAGTACATGGAAAATGGTTCTTTAGCCGAAACTCTTTCATCTAAAACTAATATCCTTGATTGGAGTAAAAGGTATGATATTGCTTTAGGAACATCTAGAGTTCTAGCATATCTACATGAAGAATGTTTGGAGTGGATTTTGCATTGTGATATAAAGCCGCAAAATATACTTCTTGATTCTAACTTTCAACCCAAGTTAGCGGATTTTGGATTGTCTAAGCTGAAAAATAGAAACAATCTCAATAATAATTCAGAATTCTCGATGATAAGAGGAACAAGAGGATACATGGCACCTGAATGGATTTTGAATTTACCAATAACGTCTAAAGTGGATGTTTATAGTTATGGGGTTGTTTTGTTGGAGATGATAACCGGAAAGAGTTCAACAATGATGAATATAGAAGGAGATGATGGAGAAGTGGCATATAATGGAAGGTTGATAACTTGGGTAAGAGAGAAAAAGAGGAGTACTACATTTTGGGTGGAAGAAATCATGGATCCTTCAATGTTGAATAATTGTGATTTAATTAAAATGGAAATTTTGGCTAGAGTTGCTTTGGACTGTGTTGAGGAAGATAGGGATATTAGACCTTCTATGAGTCAAGTGGTTGAGATGCTTCAAAGTCGTGATAGAGAACTCGAGTGA 2376 0.3447 MAFTVSHFFLVFMLIHFQYCSCYLTSLKKGSSLSVKKYEEDVIVSSNGIFSAGFYQIGENAFSFAIWFTELQNHSHDPANIVWMANREQPVTGELSKLFLLNTGNILLLDEGQHNIWSSNTASNAPLELYLKDDGNLVLRELQGTTILWQSYDFPTNTLLPNQPLTRYIKLVSSRSQSNHSSGFYKLLFDDDNVIRLDYHGDVLSTYWPPHWLLSSEAGRFNYNSSRIAMLDSFGKFFSSDNYSFSTYDYGMIMQRRLTIDSDGNIRVYSRKNWSENWYVSWQVISDTCIIHGLCGENSSCSYDSKKGKKCSCLPGYKVTNDSDWSYGCKPMFDFTCNRSESTFSKLHGFEFYGYDSNSVKNITYKNCESLCLQDCYCKGFQYTYADNIFKCYTKLHLMNGRYSPSLIGEIYLRLPKGNNFSKEETMSVKDHICQVELHRDFSRKPTSHMIKFFQWLAIAVGGLECVCFFVFLFINKKSSEDKHSHHHALGFRRYSYSELKLATKNFSNEIGRGGGGVVYRATLSDQRHAAVKRLYEAKQGEREFLAEVSIIGRLNHMNLIEMWGYCVEGKHKLLVYEYMENGSLAETLSSKTNILDWSKRYDIALGTSRVLAYLHEECLEWILHCDIKPQNILLDSNFQPKLADFGLSKLKNRNNLNNNSEFSMIRGTRGYMAPEWILNLPITSKVDVYSYGVVLLEMITGKSSTMMNIEGDDGEVAYNGRLITWVREKKRSTTFWVEEIMDPSMLNNCDLIKMEILARVALDCVEEDRDIRPSMSQVVEMLQSRDRELE 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00867 791 Gene3D Transferase(Phosphotransferase) domain 1 580 791 - -
Tsu04g00867 791 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 4 788 - -
Tsu04g00867 791 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672|GO:0006468
Tsu04g00867 791 CDD PAN_AP_plant 338 416 - -
Tsu04g00867 791 ProSiteProfiles PAN/Apple domain profile. 337 416 IPR003609 -
Tsu04g00867 791 ProSiteProfiles Protein kinase domain profile. 505 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00867 791 PIRSF SRK 1 791 IPR024171 GO:0004674
Tsu04g00867 791 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 209 IPR036426 -
Tsu04g00867 791 CDD B_lectin 43 155 IPR001480 -
Tsu04g00867 791 Pfam Protein kinase domain 508 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00867 791 ProSitePatterns Protein kinases ATP-binding region signature. 511 533 IPR017441 GO:0005524
Tsu04g00867 791 Pfam S-locus glycoprotein domain 241 319 IPR000858 GO:0048544
Tsu04g00867 791 Gene3D - 19 153 IPR036426 -
Tsu04g00867 791 Pfam D-mannose binding lectin 81 167 IPR001480 -
Tsu04g00867 791 ProSiteProfiles Bulb-type lectin domain profile. 29 152 IPR001480 -
Tsu04g00867 791 SMART serkin_6 505 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00867 791 CDD STKc_IRAK 519 784 - -
Tsu04g00867 791 Pfam PAN-like domain 337 395 IPR003609 -
Tsu04g00867 791 Gene3D Phosphorylase Kinase; domain 1 472 579 - -
Tsu04g00867 791 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 4 788 - -
Tsu04g00867 791 SMART blect_4 34 155 IPR001480 -
Tsu04g00867 791 SUPERFAMILY Protein kinase-like (PK-like) 483 784 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00867 Tsu-Chr4 8330882 8338004 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00867 459 790 Receptor kinase-like Gene Family AT1G56120 39.535 1.09e-59 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Tsu04g00867 Pkinase 4.8e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00867 - - gmx:100784287 1074.31