Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00862 ATGGCTACCAATGTATCTTTGCTAGAAAAGCCTAGAAAATCAATTCCCAAAACATTTTGGTTAATCATCTCTTTAATTGCTATCATAAGCTCATCAGCACTTATTGCTACTCATCTCAACAAACCAATGTCCTTCTTCAACCTATCCTCAAATTCCAATCTGTGTGAGCATGCTATTGATACAAAATCATGCTTAACTCACGTATCAGAAGTGGTTCAAGGTTCAACCTTAGCCAACACAAAAGACCACAAATTGAGTACACTCATATCCTTATTAACCAAGTCCACCACACACATTCAAAAAGCGAAGGACACGGTAAATGTTATCAAACGCCGAATTAACAATCGTAGAGAGGAAATGGCTTTGAATGACTGTGAGGAACTAATGGACTTGTCTATGGACAGAGTTTGGGACTCACTGTTGAGTTTAACTAAAGATAACACTGATTCAAAGCAAGATGCTCATATGTGGCTAAGTAGTGTGCTCACTAATCATGCAACATGTTTGGATGGTTTAGAAGGTACATCTCGGGTTGTTATGGAAAGTGACCTTCATGACTTGATATCTAGAGCTAGATCTGCTCTTGCTGTGCTTGTTTCCGCTTTACCTCGAAAGGATCATAGTGGATTCATTGATGAATCACTCAATGGGGACTTTCCGTCGTGGGTAACAAGTAAGGATCGAAGGCTTTTGGAATCTTCAGTTGGGGACATAAAGGCTAATGCTGTGGTGGCTAAGGATGGGAGTGGCAAGTTCAAGACTGTGGCTGAGGCTGTGGCATCTGCACCGGACAACGGTAAGGCAAGGTATGTTATCTATGTGAAAAAGGGAATCTACAAAGAGAATGTAGAAATCggtaagaaaaaaacaaatgtgATGCTTGTTGGTGATGGTATGGATGCGACAATAATCACAGGCAGCTTAAATTTCATCGATGGAACAACCACCTTCAAAAGTGCAACTGTTGCTGCTGTTGGAGATGGGTTTATAGCTCAGGACATTAGGTTCCAAAACACGGCAGGCCCAGAGAAGCACCAGGCAGTTGCTCTTCGCGTTGGCGCTGATCAATCCGTCATCAACCGCTGCAAAATTGATGCATTTCAAGACACTCTCTATGCACACTCCAACCGGCAATTTTACCGTGACTCCTACATTACTGGTACCGTTGACTTCATCTTTGGAAATGCAGCTGTTGTGTTCCAGAAGAGCAATCTCGTGGCCAGAAAGCCCATGAGCAACCAAAAAAACATGGTCACAGCCCAAGGTCGAGAAGATCCAAACCAGAACACTGCAACATCAATTCAGCAATGTAACATAATACCAAGCTCAGACCTCAAGCCTGTGCAAGGCACCATCAAAACATACCTCGGCCGTCCATGGAAGAAATACTCCAGGACAGTTGTGCTGCAATCCGTCGTGGATGGACACATTGACCCGGCAGGATGGGCTGAATGGGATGCAGCAAGTAAGGACTTTCTCCAAACATTGTATTACGGAGAGTACATGAACAGTGGAGCAGGTGCTGGTACCAGCAAGAGAGTGACTTGGCCTGGTTATCATATCATCAAAAGCGCTGCCGAGGCTAGCAAGTTTACGGTAGCACAACTCATCCAAGGAAATGTTTGGTTGAAGAATACAGGAGTTGCCTTCATCGAAGGTCTGTAG 1665 0.4342 MATNVSLLEKPRKSIPKTFWLIISLIAIISSSALIATHLNKPMSFFNLSSNSNLCEHAIDTKSCLTHVSEVVQGSTLANTKDHKLSTLISLLTKSTTHIQKAKDTVNVIKRRINNRREEMALNDCEELMDLSMDRVWDSLLSLTKDNTDSKQDAHMWLSSVLTNHATCLDGLEGTSRVVMESDLHDLISRARSALAVLVSALPRKDHSGFIDESLNGDFPSWVTSKDRRLLESSVGDIKANAVVAKDGSGKFKTVAEAVASAPDNGKARYVIYVKKGIYKENVEIGKKKTNVMLVGDGMDATIITGSLNFIDGTTTFKSATVAAVGDGFIAQDIRFQNTAGPEKHQAVALRVGADQSVINRCKIDAFQDTLYAHSNRQFYRDSYITGTVDFIFGNAAVVFQKSNLVARKPMSNQKNMVTAQGREDPNQNTATSIQQCNIIPSSDLKPVQGTIKTYLGRPWKKYSRTVVLQSVVDGHIDPAGWAEWDAASKDFLQTLYYGEYMNSGAGAGTSKRVTWPGYHIIKSAAEASKFTVAQLIQGNVWLKNTGVAFIEGL 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00862 554 ProSitePatterns Pectinesterase signature 1. 266 285 IPR018040 -
Tsu04g00862 554 ProSitePatterns Pectinesterase signature 2. 385 394 IPR033131 -
Tsu04g00862 554 Gene3D - 235 554 IPR012334 -
Tsu04g00862 554 Pfam Plant invertase/pectin methylesterase inhibitor 53 187 IPR006501 GO:0004857
Tsu04g00862 554 SMART PMEI_2 46 197 IPR006501 GO:0004857
Tsu04g00862 554 PANTHER PECTINESTERASE 20 552 - -
Tsu04g00862 554 Coils Coil 99 119 - -
Tsu04g00862 554 PANTHER PECTINESTERASE 20 552 - -
Tsu04g00862 554 SUPERFAMILY Pectin lyase-like 239 553 IPR011050 -
Tsu04g00862 554 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 186 IPR035513 -
Tsu04g00862 554 CDD PMEI-like_4 57 200 - -
Tsu04g00862 554 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 201 IPR035513 -
Tsu04g00862 554 Pfam Pectinesterase 241 540 IPR000070 GO:0030599|GO:0042545
Tsu04g00862 554 TIGRFAM PME_inhib: pectinesterase inhibitor domain 23 182 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00862 Tsu-Chr4 8275170 8277205 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00862 3 554 Carbohydrate Esterase AT1G11580 56.661 0.0 616
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00862 K01051 - gmx:100815836 830.091