LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu04g00851	ATGTCGGCGACGTCGCCGTCTCCGGAATCCTCCAACGCCGTCCCACCGCCGCAAACACTACCTTCTAATACTACTCGACCGCCTTCCTCATCTACTGCTCCGTCGCCTAACAGTTCACCTTCACCTCCACCACCGCAACAACCACCCTCTTCATCTTCACCTTCACCTCCTCCGGCTGCTCCTCCGCCAGCTGTTCCGTCGTCTCCTCGGCCTTCACCTCCATCGCCGCCTCCTGTAGCTCCTCCTACTTCAACCCCGCCAACACGCCCTCCTCCATCACCCCAATCGCCATCACCATCTTCACCAGCTCGTCCCTCACCACCACCGCAATCAAGAAGCCCTCCTCCGCCTTCACCACCAATAGCACCGTCACCACCACCATCTTCTCCACCTCGTCcctcaccaccaccaccaccacagtCAAGAAGCCCTCCCCCGTCTTCACCACCAATAGCCCCGTCAAATCCACCCCAATCATCTCCACCGGGaaattcatcatcttctccCACCGTGACACCACCCAGACCTTCACCTCCACCATCTCACAataactcatctcaaactccaCCACCAGCATCATCACCGCCGTCACCATTACCATcaccatcaccatcatcaaccaGTTCTCCTACCAGACCTAGTACACCACCACCTCGGCCTTCAAATTCAACACCAAGGGTTGTATCTCCTCCATCACCGTCAATCATTCAACTGTCTCCACCGCCGCCACAGAATGGACCAGAACAATCAAGCCCTGAAACCGGAAGCAGTGGTGGAATTGGTTCCGGTGCTGTAGTGGCTATAGCTGTATTTGGTGGAATTCTATTGCTTGGCTTCATTGGAGTTGCTATTTGGTGTTTGAGGAGGCAAAAGAAAAAGGATTCTCCTAATGATGGTTATGTCATGCCTCTCACTCTTCCCTCGTCAACTGAATCAgATTCGTCCTTTTTAAAGATACACGCTGCCTCTGATCCTCTTGTAAGAAGTGGATCTAGCAGTGATGTTGTGCATACACCAACTGACCCTGGTGGTGGAATGGGCCACTCAAGGAACTGGTTTTCATATGAAGAACTAATCAAGGCCACAAATGGTTTCTCAACTCAGAATCTTTTGGGAGAAGGTGGATTTGGTTCCGTGTATAAAGGATGTTTACCTGATGGCAGAGAGATAGCAGTGAAGCAGCTCAAAATTGGTGGGAGTCAAGGGGAGAGAGAATTCAAAGctgaagttgacataattagTCGTATACATCACCGTCATTTGGTTTCTTTAGTTGGATACTGCATTCAAGATAACAGAAAAATACTTGTCTATGACTATGTCCCTAACAACACACTTCATTTTCATCTACATGTGGAAGGTCAACCTGTGCTGGAATGGGAAAAACGTGTTAAAATCGCAGCTGGTGCAGCTCGAGGAATAGCTTATCTCCATGAAGACTGCAATCCTCGGATTATTCACAGAGATATCAAGCCATCTAACATTCTTTTGGATTACAACTATGAAGCTCAAGTCGCAGATTTTGGCCTAGCGAAATTAGCTCTAGATGCAAATACACATGTAACGACGCGTGTCATGGGAACTTTTGGGTATGTTGCCCCTGAATATGCGTCAAGTGGAAAATTGACCGACAAGTCTGATGTATATTCTTTTGGAGTTGTGCTTTTGGAACTCATTACCGGACGGATGCCAGTAGATCCATCACAAATGGGAGATGAGAGTCTAGTTGAATGGGCTCGACCTCTGCTAAGTGATGCACTTGAAACGGGGGAATTCGAGAGTTTCATAGATCCAAAGCTAGGAAAGAACTACATTGACAGTGAAATGTTTTGCATGATTGAAGTTGCTGCTGCTTGTGTTCGGCATTCAGCTTCTAAGAGACCTCGTATGGGACAgGTTGTTAGAGCTTTCGAAAGCTTAGCAACCTCAGATCTAACGAACGGAATGCGAGTTGGTGAAAGCCGTGCATTTGACTCTGCAGAACAATCTGAAGAAATAAGATTATTTCGGAGAATGGCATTCGGTAGTCAAAATTATAGCACAGACTATTTTAACCACTCTAGTTTGCGATTGTAA	2076	0.4547	MSATSPSPESSNAVPPPQTLPSNTTRPPSSSTAPSPNSSPSPPPPQQPPSSSSPSPPPAAPPPAVPSSPRPSPPSPPPVAPPTSTPPTRPPPSPQSPSPSSPARPSPPPQSRSPPPPSPPIAPSPPPSSPPRPSPPPPPQSRSPPPSSPPIAPSNPPQSSPPGNSSSSPTVTPPRPSPPPSHNNSSQTPPPASSPPSPLPSPSPSSTSSPTRPSTPPPRPSNSTPRVVSPPSPSIIQLSPPPPQNGPEQSSPETGSSGGIGSGAVVAIAVFGGILLLGFIGVAIWCLRRQKKKDSPNDGYVMPLTLPSSTESDSSFLKIHAASDPLVRSGSSSDVVHTPTDPGGGMGHSRNWFSYEELIKATNGFSTQNLLGEGGFGSVYKGCLPDGREIAVKQLKIGGSQGEREFKAEVDIISRIHHRHLVSLVGYCIQDNRKILVYDYVPNNTLHFHLHVEGQPVLEWEKRVKIAAGAARGIAYLHEDCNPRIIHRDIKPSNILLDYNYEAQVADFGLAKLALDANTHVTTRVMGTFGYVAPEYASSGKLTDKSDVYSFGVVLLELITGRMPVDPSQMGDESLVEWARPLLSDALETGEFESFIDPKLGKNYIDSEMFCMIEVAAACVRHSASKRPRMGQVVRAFESLATSDLTNGMRVGESRAFDSAEQSEEIRLFRRMAFGSQNYSTDYFNHSSLRL	691

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu04g00851	691	MobiDBLite	consensus disorder prediction	33	227	-	-
	Tsu04g00851	691	SUPERFAMILY	Protein kinase-like (PK-like)	348	636	IPR011009	-
	Tsu04g00851	691	PRINTS	Proline rich extensin signature	6	27	-	-
	Tsu04g00851	691	PRINTS	Proline rich extensin signature	62	87	-	-
	Tsu04g00851	691	PRINTS	Proline rich extensin signature	27	43	-	-
	Tsu04g00851	691	PRINTS	Proline rich extensin signature	44	61	-	-
	Tsu04g00851	691	MobiDBLite	consensus disorder prediction	234	248	-	-
	Tsu04g00851	691	PANTHER	BNACNNG34790D PROTEIN	72	686	-	-
	Tsu04g00851	691	Gene3D	Transferase(Phosphotransferase) domain 1	441	656	-	-
	Tsu04g00851	691	MobiDBLite	consensus disorder prediction	1	258	-	-
	Tsu04g00851	691	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	485	497	IPR008271	GO:0004672\|GO:0006468
	Tsu04g00851	691	ProSitePatterns	Protein kinases ATP-binding region signature.	371	393	IPR017441	GO:0005524
	Tsu04g00851	691	CDD	STKc_IRAK	371	640	-	-
	Tsu04g00851	691	ProSiteProfiles	Protein kinase domain profile.	365	640	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu04g00851	691	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4	72	686	-	-
	Tsu04g00851	691	SMART	serkin_6	365	637	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu04g00851	691	Gene3D	Phosphorylase Kinase; domain 1	344	440	-	-
	Tsu04g00851	691	Pfam	Protein kinase domain	366	632	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu04g00851	Tsu-Chr4	8184581	8188967	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu04g00851	136	687	Trihelix Transcription Factor Family	AT5G38560	55.615	0.0	556

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-1	Tsu04g00851		Pkinase	1.1e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu04g00851	-		-	mtr:MTR_0194s0030	804.668