Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00848 ATGGCTATTGAAATTCCAGAGATGAAGCCAATCCATTTTTTCAAGATCATATTTACTCAAAACCTTCTTCAAGGAAAGCTTatgatcccaagaaagtttgtgaagaaatatggAAAAGGTTTACCAAAAGATATATATCTAAAGACTCCAAATGGTGCAAAGTGGAAATTAAATTTGGTAAAAAGTGATGGAAAAATATGGTTTGAAAAGGGTTGGAAGGAATTTGCAAATTATCATTCTCTAGCTCATGGCCATCTTTTGCTTTTCAAATATCAAAGAACTTCCCATTTTCATGTCCACATCTTTGAAAAAAATGCCTTAGAGATACAATATCCTTTCAAAAGAGTTGAAGCGAAAAGGGTACACTCCAATGGTCAAGGAAATAAACCTCCAATTAATGAAGATTGTAGAACAAGTCATAAGAGAAAAGCGAACTCCTCCTTTGAATTTGGAAGTAGTAGTTGTGTTAAAGTTTGGAAACCACAAAAGGTAGCTGTGCATCTTATTGATACAAAGTGGAAAGGGAAACAAGTGATTACTGCTAAGAAACCTATAACTCTTGAAAGAGCAAAATCTTTCAAAACCTCTAATCCATCATTTGTTGTTGTCATGCGTGCATCATACGTTGAACACCATTTCCTTCTGAGTATACCACATAAGTTTGGTATGAGACACTTTGATTTGGATAAAAAGAGAGGAGATATTTATTTTCAGGTGTTAAACGGAAGAGTTTGGCCTTCAAGATATCTAATCAGGATGTCCGTTTCGGGACTAAAATTCGAACTTTCAAGTGGATGGAAGGAATTTGCAAAGGACAATAACTTGAAAGTTGGTGATGTTTGCACCTTTGAGCTCATCTCTAACACTATACTTACCTTTATTGTTCACATCTTCAGAGAGAAAAACAATGATAACACAAATTGTTCAACATCTCAAAGAGAGCAATTGGTTATTGCTAAGAAAGTTACAGCACTTGACAGAGCAATTTCTTTCCGAACTTGTAATCCATCCTTTCATGTTGTCATGCGTCCATCATACATAGATGGTCCTTGTAATCTGAATATACTAAGGGAGTTTGGCAAAAGATACTTGTTAGGTTTAGACAATAAGCAGGGAGATCTTCAACTTAGGTTATTAAATGGGAAAGTTTGGCCTGCAAGGTACCTAATTAGGATAAACAATAGAGGAGGAGAAAGATTTGAAATGCATTCAAGTGGATGGAAAATATTTGCAAAAGACAATAACTTGAAAGTTGACAATTCAATTTGTTCAACATCTCAAGCATCAACACTAAGGAGAGGAGCTATTTGA 1311 0.341 MAIEIPEMKPIHFFKIIFTQNLLQGKLMIPRKFVKKYGKGLPKDIYLKTPNGAKWKLNLVKSDGKIWFEKGWKEFANYHSLAHGHLLLFKYQRTSHFHVHIFEKNALEIQYPFKRVEAKRVHSNGQGNKPPINEDCRTSHKRKANSSFEFGSSSCVKVWKPQKVAVHLIDTKWKGKQVITAKKPITLERAKSFKTSNPSFVVVMRASYVEHHFLLSIPHKFGMRHFDLDKKRGDIYFQVLNGRVWPSRYLIRMSVSGLKFELSSGWKEFAKDNNLKVGDVCTFELISNTILTFIVHIFREKNNDNTNCSTSQREQLVIAKKVTALDRAISFRTCNPSFHVVMRPSYIDGPCNLNILREFGKRYLLGLDNKQGDLQLRLLNGKVWPARYLIRINNRGGERFEMHSSGWKIFAKDNNLKVDNSICSTSQASTLRRGAI 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00848 436 ProSiteProfiles B3 DNA-binding domain profile. 12 105 IPR003340 GO:0003677
Tsu04g00848 436 SUPERFAMILY DNA-binding pseudobarrel domain 9 105 IPR015300 -
Tsu04g00848 436 Pfam B3 DNA binding domain 338 421 IPR003340 GO:0003677
Tsu04g00848 436 Pfam B3 DNA binding domain 13 105 IPR003340 GO:0003677
Tsu04g00848 436 Pfam B3 DNA binding domain 200 300 IPR003340 GO:0003677
Tsu04g00848 436 CDD B3_DNA 336 423 IPR003340 GO:0003677
Tsu04g00848 436 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 311 421 - -
Tsu04g00848 436 Gene3D - 5 106 IPR015300 -
Tsu04g00848 436 Gene3D - 177 303 IPR015300 -
Tsu04g00848 436 Gene3D - 317 425 IPR015300 -
Tsu04g00848 436 SUPERFAMILY DNA-binding pseudobarrel domain 195 300 IPR015300 -
Tsu04g00848 436 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 7 300 - -
Tsu04g00848 436 PANTHER B3 DOMAIN-CONTAINING 311 421 - -
Tsu04g00848 436 CDD B3_DNA 12 102 IPR003340 GO:0003677
Tsu04g00848 436 SMART B3_2 200 301 IPR003340 GO:0003677
Tsu04g00848 436 SMART B3_2 338 436 IPR003340 GO:0003677
Tsu04g00848 436 SMART B3_2 13 105 IPR003340 GO:0003677
Tsu04g00848 436 ProSiteProfiles B3 DNA-binding domain profile. 200 301 IPR003340 GO:0003677
Tsu04g00848 436 PANTHER B3 DOMAIN-CONTAINING 7 300 - -
Tsu04g00848 436 CDD B3_DNA 198 299 IPR003340 GO:0003677
Tsu04g00848 436 SUPERFAMILY DNA-binding pseudobarrel domain 334 422 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00848 Tsu-Chr4 8114997 8160445 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00848 309 423 B3 DNA Binding Superfamily AT3G18990 33.621 1.61e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu04g00848 B3 1e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00848 - - mtr:MTR_7g050580 452.21