Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00847 ATGATGGATAGTGTTGGTAGCAGAACTCGTAGCAAGAATGTTCCTTTGTTTGGATGTCTTTCTCTCCAACATAAGACTAAGACAAAACGGGTCAGAGattcatttgtttatttggGTTCTGTTTCTTCTTGCAAAAAAATCCGGAAACAAAATGAAGATGAAAGTGACCATCAACAGGTTTCTGATAAGAAAATGTTTGAGGGTTGCTCAGATAAtgctaaaaatgaaaactttagCAATGTAAAGTGTAGTTTCGAACGCGAAAACTccattgatgaagatgaaaGTGAGGAAAACTCTGAAGAAGATTCTGATGatagtgaagaagatgatgagactagtgatgaagattttgaagttgATGAGGTGAATGAAATTTCTGACAGTGATGAAGATACTTCATCATCTTGCTCTCCTTATGTTGTTTATTTCAATGAAAACTATTACAACAAAAAATGTGGAATTTCTACCAAACCATTGGAGGAGGAAGAGATTGAGAAGAGTTCAATGAAGGATTCTTCTTCAAAGGTTAATGAAGTTTCTCAGAAACAAGATAAGAAGAATGTTGGTTCTTCTTCGATGGCTTTTGtaaatgaaaatcaaaaggATAAGAAGAAGAATTCTAGTTCAAGAAGACAACAACATAGTGTACAAGTGGTAGAAGAGACAGAAGGTTCAAACAAAGACAATGGTAAAGCTAATGCTAATGATGACACTACGAATCTCGGTGATTCAGGTGAAGGAGAATCACCAAGACTCGCAATGTCATTACAAAATCAAAAGTTAGCTAAACAAAAAATTGTGGAGGAGGAAGAGATTAAGAAGAGTTCAATGAAGGGTTCTTCGTCAAAGGTTAATGAAGTTTCTCAGAAACAAGATAAGAAGagtgttgttttttctttaagaCAACAACATAGTGTAACAATGGTGGAAGATATAGAAGATTCAAACAAAGACAAAGACAATGGTAAAGTTAATGCTAATGATGACACTGCGAATCTCGGTGATTCAGGTGAAGGAGAATCACCGAGACTCACAGTGTCATTACAAAATGAAAAGTTAGCTAAACACAAAATTGTGGAGAACAAGGGAAGGGGTGAGAGATGTGGAAATAGAATTAGTAATGGTAAGAAGAAGGAAACCATGGATGACAAAAGTGGTCAAAGCAAGCTATGTTTAAACAAGGAGCTGTACAAACTTCTTGTCGAATGGGAGTGCTATTTGGGAACCAAAAACACTAAGAAGAACGGTGATTCAGTTGCGTTGGACGAGGTGAAGGATGATGATGGTGTTAACCGGCAAGATATGCGTCCACAAGTTTGTAAGGAGACACCTCCATTTTTTTGGAGTCTTGGTAAAAAAGTTGAAGAAGTGGCGCCAAAAACGGAGGAAGAAGAAATGATATGTGAGTTGTGGCATGAAATGGATGGAGTGAGTAGAGAAGATGAAGCTGAATCCATGATTGGAAATATAGGGACCAACGAAGCTTCGAACAAAAATATGGAAGATCCATTTTCCCTTTGTAACCATGACACTCGTCTCGATGAGGAGATTGGAGTATATTGCAGGTTGTGTGGTTTGGTTCTCACTGAGATCAGATATATCTCAGAGCCGGTGGTGGATAGATATCCGAATGAAGGTTCAGGAAGAAGGGCGTCAATTGGTGGAGACGACGTTTCACTCTTTGATCGGTCTCACTTTAATGTTTCTAATGATGACTCAAAGGCTAATTTTTCTCATAATGAAGGCACTGTTTGGGACAAAATTCCTGATGTGAAACAAACCTTATACCCTCACCAACAAGAAGGTTTTGAATTCATATGGAAAAACTTGGCTGGAAGCATCGAGCTTCAAAAGTTAAAGAATGCTGATCCTCGCAGCGAAGGTGGCTGCATTATTTCTCATGCCCCTGGAACCGGAAAGACAAGGCTGACCATCGTGTTTCTCAAGGCATATTTGCAAGTGTTTCCAAAATGCATGCCGATTATTGTCGCTCCTGCTAGTATACTACTAACTTGGGAAGAGGAATTCAAGAAATGGGACATTGGATTTCCATTTCACAATTTAAGCAATCGGGAGTTATCTGGTAAAGAGCATGCTGATGCGGTTAACACATTCGATATGTCCAATACACGACATGGTATTGAAGAAACTCGAATGGTGAAACTGATATCGTGGTTCAAAGAAACAAGCATTCTTGGAATCAGCTACACTTTGTATGGAATGAAATGCAaagataagaaaaagaaaaagcacGAAAGTGTGAAAgagagaaaaggaaaatttgATATGCGAAAAGTTCTACTTAAAGCTCCTGGTTTGTTAGTTCTGGATGAAGGACACACACCAAGAAATCAAAGAAGTCATATTTGGAAGGTGTTGTCAAAGATTCAAACGCAGAAGCGAATCATCCTTTCTGGAACTCCATTCCAGAACAATTTCTGGGAGCTTTACAGCACTTTGAGCTTAGTCAAGCCTTCTTTTCCTGACACGATACCGCCTGAGCTAAAAAGATTTTGCCATGAGCGGGGATGTAAATCATCTAAAGAATGGAGTTGGGAACCTGTTTCGGTTAACACAACAAGAAACACTTCTGATGATAAGATCAAGAGGCTGAAATTGCTAATGGATCCCTTTGTGCATGTTCACAAAGGTTCGATCCTTGAAAATAAGCTTCCCGGGTTAAGGGACTGTTTGGTGACTTTGAAAGCCGGTAGTTTGCAGAATGAAATCCTGAAGATAATTAAACGTTCTCAGAACACAGTATTTAACTTTGAGTGCAAGATTGCATTGACATCCGTCCATCCATCTCTTTTACTTGAATGTGATCTTTCGGAAGAAGAAGAATCTGTACTCAACAAGGATCAGCTGGAAAAGATAAGACTGAACCCGTATGAAGgtgtcaaaacaaaatttttgtGCGAGTTTGTTCGGCTGTGTGATTCTCTTAACGAGAAAGTCCTCGTGTTCAGCCAATTCCACGCTCCTTTACGATTAATTAAAGACCAATTAAACTCGGTTTTTAACTGGTATAAGGGAGAAGTGCTGTTCATATCTAGCAATGATTCTGCAAAAGTTAAGCAGTCCTTAATCCATAGCTTCAATGATGAAAATAGCAACGCGAAGATTCTACTTGCAGCTACAAAAGCTTGTTCCGAGGGAATTAGCTTAGTTGGAGCTTCAAGGGTTGTGTTTCTTGATGTTGTATGGAATCCTTCGGTCGAAAAACAGGCTATCAGCCGAGCCTATAGGATTGGACAGAAGAAGAAGGTAACTGCATACCGTCTTCTCGCTGAAGGGACTACTGAGGAAGAAAAATATGGTAAACAAGCCGAAAAGGACCGGTTATCTAAGCTCCTTTTTTCAGCTAAAACTGCCGCCGGTAATGATGATGAGTCCAAGAATTATGCTGTGAACTTTGAAGATAGTGTTCTTGATAAGATGACTCGGCACGAAAAGCTCAAAGACATGTTTGTTAAATGCGTGGTACTGAGGAAGGAGCGAGATTTGGTCTGA 3516 0.3749 MMDSVGSRTRSKNVPLFGCLSLQHKTKTKRVRDSFVYLGSVSSCKKIRKQNEDESDHQQVSDKKMFEGCSDNAKNENFSNVKCSFERENSIDEDESEENSEEDSDDSEEDDETSDEDFEVDEVNEISDSDEDTSSSCSPYVVYFNENYYNKKCGISTKPLEEEEIEKSSMKDSSSKVNEVSQKQDKKNVGSSSMAFVNENQKDKKKNSSSRRQQHSVQVVEETEGSNKDNGKANANDDTTNLGDSGEGESPRLAMSLQNQKLAKQKIVEEEEIKKSSMKGSSSKVNEVSQKQDKKSVVFSLRQQHSVTMVEDIEDSNKDKDNGKVNANDDTANLGDSGEGESPRLTVSLQNEKLAKHKIVENKGRGERCGNRISNGKKKETMDDKSGQSKLCLNKELYKLLVEWECYLGTKNTKKNGDSVALDEVKDDDGVNRQDMRPQVCKETPPFFWSLGKKVEEVAPKTEEEEMICELWHEMDGVSREDEAESMIGNIGTNEASNKNMEDPFSLCNHDTRLDEEIGVYCRLCGLVLTEIRYISEPVVDRYPNEGSGRRASIGGDDVSLFDRSHFNVSNDDSKANFSHNEGTVWDKIPDVKQTLYPHQQEGFEFIWKNLAGSIELQKLKNADPRSEGGCIISHAPGTGKTRLTIVFLKAYLQVFPKCMPIIVAPASILLTWEEEFKKWDIGFPFHNLSNRELSGKEHADAVNTFDMSNTRHGIEETRMVKLISWFKETSILGISYTLYGMKCKDKKKKKHESVKERKGKFDMRKVLLKAPGLLVLDEGHTPRNQRSHIWKVLSKIQTQKRIILSGTPFQNNFWELYSTLSLVKPSFPDTIPPELKRFCHERGCKSSKEWSWEPVSVNTTRNTSDDKIKRLKLLMDPFVHVHKGSILENKLPGLRDCLVTLKAGSLQNEILKIIKRSQNTVFNFECKIALTSVHPSLLLECDLSEEEESVLNKDQLEKIRLNPYEGVKTKFLCEFVRLCDSLNEKVLVFSQFHAPLRLIKDQLNSVFNWYKGEVLFISSNDSAKVKQSLIHSFNDENSNAKILLAATKACSEGISLVGASRVVFLDVVWNPSVEKQAISRAYRIGQKKKVTAYRLLAEGTTEEEKYGKQAEKDRLSKLLFSAKTAAGNDDESKNYAVNFEDSVLDKMTRHEKLKDMFVKCVVLRKERDLV 1171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00847 1171 SMART helicmild6 1002 1086 IPR001650 -
Tsu04g00847 1171 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 622 827 IPR014001 -
Tsu04g00847 1171 MobiDBLite consensus disorder prediction 161 183 - -
Tsu04g00847 1171 SMART ultradead3 592 839 IPR014001 -
Tsu04g00847 1171 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 2 1170 IPR044567 GO:0080188
Tsu04g00847 1171 MobiDBLite consensus disorder prediction 212 263 - -
Tsu04g00847 1171 MobiDBLite consensus disorder prediction 184 198 - -
Tsu04g00847 1171 MobiDBLite consensus disorder prediction 264 278 - -
Tsu04g00847 1171 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 772 1133 IPR027417 -
Tsu04g00847 1171 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 589 879 IPR027417 -
Tsu04g00847 1171 MobiDBLite consensus disorder prediction 48 70 - -
Tsu04g00847 1171 Pfam SNF2-related domain 608 913 IPR000330 GO:0005524|GO:0140658
Tsu04g00847 1171 Pfam Helicase conserved C-terminal domain 980 1086 IPR001650 -
Tsu04g00847 1171 MobiDBLite consensus disorder prediction 90 129 - -
Tsu04g00847 1171 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 2 1170 - -
Tsu04g00847 1171 MobiDBLite consensus disorder prediction 48 138 - -
Tsu04g00847 1171 CDD SF2_C_SNF 969 1097 - -
Tsu04g00847 1171 MobiDBLite consensus disorder prediction 366 385 - -
Tsu04g00847 1171 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 975 1133 IPR001650 -
Tsu04g00847 1171 MobiDBLite consensus disorder prediction 309 326 - -
Tsu04g00847 1171 Gene3D - 895 1168 IPR027417 -
Tsu04g00847 1171 MobiDBLite consensus disorder prediction 161 297 - -
Tsu04g00847 1171 MobiDBLite consensus disorder prediction 309 345 - -
Tsu04g00847 1171 MobiDBLite consensus disorder prediction 279 297 - -
Tsu04g00847 1171 Gene3D - 565 867 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00847 Tsu-Chr4 8100962 8105163 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00847 984 1144 RAD5 or RAD16-like Gene Family AT5G05130 35.802 2.12e-16 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tsu04g00847 SNF2_N 5.6e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00847 K10875 - gmx:100812737 826.624