Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00838 ATGTCCTTCAATCAATCAAAGTCCGATAAAAGCGACACTAACTACCGACGAACCGGTCGATCCTCCAGCTTCAATCAGCAGCGAGGTAATAccggtggtggtggtgggtcATACGTTAAGGCCGGCACTCCCGCTGCCGCACCTTCTCCCTcactatcttcttcttctcggAGTTTTAACAAGAAGTCTAATAATCATGCACAAGGTGGAGGACCATCTAGGGTAGTAAACCCTACCCCGGCAAATGCTGCCAATTCACCTGCGATTAATTATGCTTCTGCAGTCCGAGCAACACCGAATGGTTCCCATGTACAGCCGCAATTTCATGGTGGTTCTGATGCATCGGCTACAAATGCAACTGCCAAGCCATCTGAATCATCAGCGGCACAGAGGAGCACAAGAGTTGTTCCTAAAGCTCCTATTTCTCAACCTCCTCCCGCGAGTTCTGATGCTGCAGCTCCTAAGACCCCTGCTAAGGGAGATGCATCCAAAGCATTCCCTTTTCAATTTGGATCTCTTAGTCCTAGCATTATGAATGTGGTGACAATCCCTGCTCGTACAAGCTCGGCTCCTCCCAATATAGATGAGCAGAAGCGTGATCAGGCTCGTCAGGATTCTTCAAGGCTCGCGCCTTCTGTGCCAACACCTCCTGTTCCAAAGCAGCTTCCAGCAAGTAAGGATACAAGTGTGTCCGACCAATCTAAGGGTGGGGAAACTCATACTGGTACAAGGACAAAAAAGGATGCTCAAGTGTCACATTTACCCCCAGCAAGCTTGATGCAGAAGCCTTCTGTTATTCCAATGCCAATACCATATCACCAGCCACAGGCACCACTACACTTTGCTGCTCCTAATCCACATATTCAACCTCATGGTATGTCAACTGCATCTCTTCAGATGCCTTTACCAATTGGAAACACTGCTCAGGTGCAACGCCCGGTATTTGTTCCAAGTCTTCCACCCCATCCTATGCGCCCTCAAGGAATTATGCATCCAGGCCAAAATATAGGTTACAATCCTCAAATGGGTCATCAATTGCCCCACCAGTTTGGCAACTTGGGTATAGGCATCAACCCACAATATTCCCCCCAGCTAGGAGGAAAATTTGCTGGACCTCGTAAAACTACTCCTGTGAAAATAACTCACCCTGATACCCACGAAGAGCTTAGACTTGATGAAAGGGAAGATGATAGTGGGTCATCTGGTGCGCCTTCTCAATCTCTGCCTGTCCAATCATTTCCAGCTTCTCATCCTATCAGTCACTATCAATCCAATTCTCCCTTTTATCAAACTCCTAGTTCTCTTCCATTATCGAGTAGCCAGATAACCCCCAACATTCAGCtaccaaaattaaattatgcaGCGAGTCATGGTCCACAAAATGTTGGTCTCACAAATTCATCGTCTCATAATTCCCTGCCTGTTAATAAAACTGCCACTTCTATCTCTGGCAATGTTGAACCACCTAAACGAGAATTTTCCCATGATGTGCCAAATGCAATCTCATCAACTATGTCTGGAGCATCTTCCGTGTCTATAAAGCCAAGTGTTGGGTCTGCTGTTGTGGTCTCATCATTTGCCAATTCAATTTCTGGTGCTCAAAAGGATGGATCTCCTAGTTCATCTAGTGATGCTTGCTCTTTCGTGCCACCAAAAGGGTCTGAAACTTATTCCAAAATCTCTTCAGAAAAATCTACTGCTGAGAAGCTTATATCATCTTCCTTGTCACCTTCATCTGCTTTGAGTGAGGATTCTGTTCCAGTTGTATCTAATAATGAAGGCATAAAAAAGGAATCTCTTAGTAGGTCAAATTCTTTGAAGGGTAATCAGAAGAAAGGACCATTGCAGCATCAGGTGGCTGTACAATCATCTTCTGTGGCTAATGAACCTTCCCTAGCTGTTGATGGTGGCATCTCTGATTGTGTAGCTTCTGAAACTGTAGGAACTAAAACAATCCATTCTGCAGCAATTGCCAGTGAAGATTTATTAGCAGCAGCTTCAGGCACAATATCAGCTACCAGTAAGAGATTGCCTTCTACGACACTTGAAGAAACGACCAGTGGTTCTACACAGGTCCCTGCTTGTGTTTCAGCTGAAGGACCTGTTACTCAAGCTGCGGATAGTTTGGACTATCATAAGAGTGCTGAGGTAGATGAAGTATCCCAAGAGGATAAACTGTTAAGACAGAATGATAGTGTAGTTAGTAATGAAGCTATTTCTACAACTTCTGGCTCATTAGATCAGCAATCTTCTGGTCTTCTAGAAACAACTTCAAAACATTGCAAGGATAATTCAGAGGATGCTATTTCTGGGAGTGGCTCAGTGTCTCTTCCAGCAGCATCGGGTACTATGGACAGACCAATTTTAGAGCCAAGTAAGGTAAAAGGTACATCAAAGGGGAAAAAGAAACGAAAGGAATTTCTTCAGAAAGCAGATGCTTCTGGGTCAACAGCTGATCTGTATAACGCATATAAGGGACCCGAGGAAAAGAAAGAAGCTGTTGCAAGTTCAGAGAGCATTGCTAATGTTTCTACTTCTGGAACTTTGAAGCAGTTGCCTGTGGATACTGCTCAACCAGATGCAGTTGCAAATGAACAATGTGTGCAGAGTAAGGCTGAACTTGAGGACTGGGAGGATGCTGCTGACATGTCCACACCAAAACTTGATGTATCAGATAAAACTCAACAGGTTAGTGACGGAAGTGCAGTTACTGACAAAAAGTACTCTCGAGATTTCCTTTTGAAATTTGCAGAGCATTGCACTGATCTTCCTGAAGGGTTTGAAATCACGGAAGACTTTGCTGTGGCTTTGATGACTTCTAATGTTAGTTCCCATGTTATTTCACATCCTTCTCCTGGAAGAAATACAGATAGGTCAGGTGGGATGTCTCGGATGGATCGTCGTGGGAGTGGTGTTATTGAGTATGATAAATGGCATAAAGTGCCTGGTGCTTTTCATTCTGGCATGCGTTTGGATGGTACTGGAAGTAATGCAGGATTTAGACCTGGACAAGGAGACAATTTTGGTGTTTTAAGGAATCCACACCCACATGGAGGGATTCTTTCCGGGCCAATGCAATCCATGGTACATCAAGGAGGAATGCAAAGACATAGCCCTGATGGCGAAAGGTGGCAGCGTGCTGCTAACTTCCAGCAGAGGGGTTTGATTCCATCTCCTTCTTCTCAATCTCCTTTGCAGACAATGCACAAAGCTGAGAAGAAGTATGAGGTGGGTAAGGTGACAGATGAGGAACAGGCGAAGCAGAGGCAGTTGAAAGGTATATTGAACAAGTTAACTCCCCAGAATTTTGAGAAGCTTTTCGAGCAGGTTAAAGCAGTTAATATTGATAACGTAGTTACTCTCACTGGTGTCATCTCACAAATCTTTGAGAAGGCCTTGATGGAACCCACCTTCTGTGAAATGTATGCCAATTTCTGTTTTCATCTGGCAGCTGCGTTGCCTGATCTCAGTCAAGACAATGAAAAGATAACATTTAAGAGATTATTGTTAAATAAGTGCCAGGAAGAATTTGAGAGGGGTGAGAGAGAGCAAGAAGAAGCTAATAAAGCTGATGAGGGTGAGGTGAAACAGTCTGATGAGGAAAGAGAAGCAAAACGATCCAAGGCTAGAAGACGAATGTTGGGTAATATCAGGTTAATTGGAGAACTATATAAGAAGAAAATGCTGACAGAGAGGATAATGCACGAGTGCATAAAAAAGTTGTTGGGTCAGTGTCAGAATCCGGATGAAGAAGATATCGAAGCTTTGTGCAAACTGATGAGTACTATTGGGGAGATGATTGACCACCCCAAAGCCAAGGAACATATGGATGTATATTTTGAAAGAATTAAATTATTGTCAAACAACATGCATTTATCTTCTAGGGTGAGGTTCATGTTAAAGGATACCATTGATTTGAGAAAGAATAGATGGCAACAAAGGAGAAAAGTTGAAGGTCCAAAGAAGATTGAAGAGGTGCACCGGGATGCTTCCCAAGAGAAGCAATCCCAAGCTGGTAGGCTGGGTCGTGGTATGGGTATTAGTACACCAAGAAGGACCCCTATGGATTTTGGTTCAAGAGGTTCATCTATGTTATCCCCTCCTAATGCTCAGATGGGTGGATTGCCTAATCAAATTCGTGGGTATGGTTCTCAGGATGTTCGTGGGTATGAAAGGCAATCTTACGACGCTAGGACGCTATCTGTTCCCTTGCTTCAAAGGCCTTTAGGTGATGAGCCAATAACCTTGGGACCCCAAGGTGGTCTTGCTAGAGGAATGTCCATTAGAGGTCCTCCGGCAGTTTTAAGTTCGATTGGTCTTAATGGTTATAACAATTTATCGGAGCGTGCTTCATACAGCTCTAGGGAGGAACTGACTCCAAGATATGTTCCGGATAGATTTTCTGGTCCAACTGCTTATGATCAATCAAATGTTCCAGAGCAGAATATGAATTATGGTAACAGGGATTTGAGAAATGTAGATAATAGGATTCTTGATAGACCTGTTGTAAATCCACCTCCTGCCCGAGCACAAGAGACTTCAGACTCCCAGTATACATCTTCAGAAAAGGGTTTGTCAGAAGAGCGACTACAGAACATGTCAATGGCAGCAATTAGAGAATATTATAGTGCTAGAGATGTGAACGAAGTTGTTTTGTGTGTCAAAGATCTGAACTCTCCAGGTTTTCATCCTTCCATGGTTTCTGTTTGGGTCACAGACTCATTTGAGAGGAAGGACACAGAGAGAGATCTTTTGGCGAAACTGCTGATCGATCTTGTAAAATCTCATGGTGGCACCTTAAGTCATGCCCAGCTCATTGGAGGGTTTGAATCTGTTTTAAGTACTTTGGAAGATGGGGTTACGGATGCCCCAAAAGCACCAGAGTTTCTTGGCCGCATTTTTGCCAAAGCTATAACAGAGCATGTAGTCTCTTTGGAGGAGATTGGGCGGTTAATACACAATGGCGGAGAAAGCCTCTTACAAATTGGACTTGCAGCTGATGTTCTTGGAAGCACCTTGGAAGTGATACAAACTGAGAAGGGTGATGCTTTTTTGACCGAGATCCAGACAAGCTCCAACTTGCAATTGCAGACTTTCCGGCCACCAGCACCGATTAAATCACGAAAACTAGAAAAATTCATTTAG 5145 0.4336 MSFNQSKSDKSDTNYRRTGRSSSFNQQRGNTGGGGGSYVKAGTPAAAPSPSLSSSSRSFNKKSNNHAQGGGPSRVVNPTPANAANSPAINYASAVRATPNGSHVQPQFHGGSDASATNATAKPSESSAAQRSTRVVPKAPISQPPPASSDAAAPKTPAKGDASKAFPFQFGSLSPSIMNVVTIPARTSSAPPNIDEQKRDQARQDSSRLAPSVPTPPVPKQLPASKDTSVSDQSKGGETHTGTRTKKDAQVSHLPPASLMQKPSVIPMPIPYHQPQAPLHFAAPNPHIQPHGMSTASLQMPLPIGNTAQVQRPVFVPSLPPHPMRPQGIMHPGQNIGYNPQMGHQLPHQFGNLGIGINPQYSPQLGGKFAGPRKTTPVKITHPDTHEELRLDEREDDSGSSGAPSQSLPVQSFPASHPISHYQSNSPFYQTPSSLPLSSSQITPNIQLPKLNYAASHGPQNVGLTNSSSHNSLPVNKTATSISGNVEPPKREFSHDVPNAISSTMSGASSVSIKPSVGSAVVVSSFANSISGAQKDGSPSSSSDACSFVPPKGSETYSKISSEKSTAEKLISSSLSPSSALSEDSVPVVSNNEGIKKESLSRSNSLKGNQKKGPLQHQVAVQSSSVANEPSLAVDGGISDCVASETVGTKTIHSAAIASEDLLAAASGTISATSKRLPSTTLEETTSGSTQVPACVSAEGPVTQAADSLDYHKSAEVDEVSQEDKLLRQNDSVVSNEAISTTSGSLDQQSSGLLETTSKHCKDNSEDAISGSGSVSLPAASGTMDRPILEPSKVKGTSKGKKKRKEFLQKADASGSTADLYNAYKGPEEKKEAVASSESIANVSTSGTLKQLPVDTAQPDAVANEQCVQSKAELEDWEDAADMSTPKLDVSDKTQQVSDGSAVTDKKYSRDFLLKFAEHCTDLPEGFEITEDFAVALMTSNVSSHVISHPSPGRNTDRSGGMSRMDRRGSGVIEYDKWHKVPGAFHSGMRLDGTGSNAGFRPGQGDNFGVLRNPHPHGGILSGPMQSMVHQGGMQRHSPDGERWQRAANFQQRGLIPSPSSQSPLQTMHKAEKKYEVGKVTDEEQAKQRQLKGILNKLTPQNFEKLFEQVKAVNIDNVVTLTGVISQIFEKALMEPTFCEMYANFCFHLAAALPDLSQDNEKITFKRLLLNKCQEEFERGEREQEEANKADEGEVKQSDEEREAKRSKARRRMLGNIRLIGELYKKKMLTERIMHECIKKLLGQCQNPDEEDIEALCKLMSTIGEMIDHPKAKEHMDVYFERIKLLSNNMHLSSRVRFMLKDTIDLRKNRWQQRRKVEGPKKIEEVHRDASQEKQSQAGRLGRGMGISTPRRTPMDFGSRGSSMLSPPNAQMGGLPNQIRGYGSQDVRGYERQSYDARTLSVPLLQRPLGDEPITLGPQGGLARGMSIRGPPAVLSSIGLNGYNNLSERASYSSREELTPRYVPDRFSGPTAYDQSNVPEQNMNYGNRDLRNVDNRILDRPVVNPPPARAQETSDSQYTSSEKGLSEERLQNMSMAAIREYYSARDVNEVVLCVKDLNSPGFHPSMVSVWVTDSFERKDTERDLLAKLLIDLVKSHGGTLSHAQLIGGFESVLSTLEDGVTDAPKAPEFLGRIFAKAITEHVVSLEEIGRLIHNGGESLLQIGLAADVLGSTLEVIQTEKGDAFLTEIQTSSNLQLQTFRPPAPIKSRKLEKFI 1714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00838 1714 MobiDBLite consensus disorder prediction 457 492 - -
Tsu04g00838 1714 Pfam MA3 domain 1536 1642 IPR003891 -
Tsu04g00838 1714 SUPERFAMILY ARM repeat 1523 1709 IPR016024 -
Tsu04g00838 1714 MobiDBLite consensus disorder prediction 47 72 - -
Tsu04g00838 1714 MobiDBLite consensus disorder prediction 944 964 - -
Tsu04g00838 1714 MobiDBLite consensus disorder prediction 1 170 - -
Tsu04g00838 1714 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 130 1704 IPR045208 GO:0003743
Tsu04g00838 1714 MobiDBLite consensus disorder prediction 1509 1524 - -
Tsu04g00838 1714 MobiDBLite consensus disorder prediction 1470 1488 - -
Tsu04g00838 1714 MobiDBLite consensus disorder prediction 222 238 - -
Tsu04g00838 1714 MobiDBLite consensus disorder prediction 875 896 - -
Tsu04g00838 1714 SMART if4_15 1088 1310 IPR003890 GO:0003723|GO:0005515
Tsu04g00838 1714 MobiDBLite consensus disorder prediction 458 487 - -
Tsu04g00838 1714 SMART ma3_7 1530 1644 IPR003891 -
Tsu04g00838 1714 MobiDBLite consensus disorder prediction 1501 1524 - -
Tsu04g00838 1714 MobiDBLite consensus disorder prediction 1313 1334 - -
Tsu04g00838 1714 Pfam MIF4G domain 1088 1309 IPR003890 GO:0003723|GO:0005515
Tsu04g00838 1714 MobiDBLite consensus disorder prediction 1180 1209 - -
Tsu04g00838 1714 MobiDBLite consensus disorder prediction 1450 1488 - -
Tsu04g00838 1714 MobiDBLite consensus disorder prediction 17 33 - -
Tsu04g00838 1714 Gene3D - 1088 1323 - -
Tsu04g00838 1714 MobiDBLite consensus disorder prediction 715 812 - -
Tsu04g00838 1714 MobiDBLite consensus disorder prediction 531 624 - -
Tsu04g00838 1714 MobiDBLite consensus disorder prediction 78 137 - -
Tsu04g00838 1714 MobiDBLite consensus disorder prediction 727 758 - -
Tsu04g00838 1714 Coils Coil 1170 1190 - -
Tsu04g00838 1714 MobiDBLite consensus disorder prediction 1313 1352 - -
Tsu04g00838 1714 SUPERFAMILY ARM repeat 1082 1312 IPR016024 -
Tsu04g00838 1714 MobiDBLite consensus disorder prediction 674 693 - -
Tsu04g00838 1714 MobiDBLite consensus disorder prediction 944 958 - -
Tsu04g00838 1714 MobiDBLite consensus disorder prediction 186 253 - -
Tsu04g00838 1714 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4G-LIKE 130 1704 - -
Tsu04g00838 1714 MobiDBLite consensus disorder prediction 379 399 - -
Tsu04g00838 1714 ProSiteProfiles MI domain profile. 1529 1653 IPR003891 -
Tsu04g00838 1714 Gene3D - 1521 1714 - -
Tsu04g00838 1714 MobiDBLite consensus disorder prediction 365 441 - -
Tsu04g00838 1714 MobiDBLite consensus disorder prediction 400 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00838 Tsu-Chr4 8021715 8029853 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00838 1 1713 Eukaryotic Initiation Factors Gene Family AT3G60240 45.530 0.0 1225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00838 K03260 - gmx:100798562 1897.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00116 08 1068492 1077813 Tsu04g00838 04 8021715 8029853 PCT