Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00837 ATGGGTTCCACAAAAGTTATGGCCTTTGAGCTGAATGGAGTGCAAATCAAAACCACCGTGACCAATGAAGTAAAAGTGATCGATGAACACATATCGTCTTTCTTACATCGTACCGACAATCAAAGAACTAAGGTTATCGGTTTTGATATTGAGTGGCGTCCTCCTTCCATGTTGGAGCCTGTAATCTTTCAACTTTGTGATGGTAATTCATGTCTGGTTTTCCACTTACATCCTAAGAATCCGGTTCCTCTTTCACTCCGTAATTTTCTTCGTCAGCCAAATTATACCTTTGTTGGTTGCGGTATTAAAGATGATTTTGATTACTTGAAGAAACACTGTGGGACTGGATGCAAAAATGCTGTAGAACTTGGGACCTTGGCTGCTACTCTCATGGATAAACCTCATTTACGTTTTTGCGGTGTTGATGAGCTAGCATTTGTGGTCAATAAACTCGATTTTCACAAGTACAGGCCTTTAAACTTGGCTTTTAATTGGGGTGATTTTCCAGTTAGTGAAAAACTTGCTAAGCTTGCTACTGTGAATGCTTACTCTTATCACAAGATTGGAAGTGCTTTGTTTGAAAGAATTTTCTTCCAGCAGAGGGGTTTGATTCCATCCCCTTCTTCTCAATCTCCTTTGCAGACAATGCACAAAGCTGAGAAGAAGTATGAGGTGGGTAAGGTGACAGATGAGGAACAGACGAAGCAGAGGCAGTTGAAAGGTATATTGAACAACTTAACTCCGCAGAATTTTGAGAAGCTTTTCGAGCAGGTTAAAGCAGTTAATATTGATAACGCAGTTACTCTCACTGGTGTTGTCTCACAAATCTTTGAGAAGGCCTTGATGGAACCCACCTTCTGTGAAATGTATGTCAATTTCTGTTTACATCTGGCAGCTGTGTTGCCTGATTTCAGTCAAGACAATGAAAAGATAACATTTAAGAGATTATTGTTAAATAAGTGCCAGGAAGAATTTGAGAGGGGTGAGAGAGAGCAAGAAGAAGCTAATAAAGCTGATGAGGGTGAGGTGAAACAGTCTGATGAGGAAAGAGAAGCGAAACGATCCAAGGCTAGAAGACGAAGGTTGGGTAATATCAGGTTAATTGGAGAACTATATAAGAAGAAAATGCTGACAGAGAGGATAATGCACGAGTGCATAAAAAAGTTACTAGGTCAGTGTCAGAATCCGGATGAAGAAGCTATCGAAGCTTTGTGCATACTGATGAGTACTATTGGGGAGATGATTGACCATCCCAAAACCAAGGAACATATGGATGTATATTTTGAAAGGATTAAATTATTGTCTAATAACATGAATTTATCTTATAGGGTGAGGTTCATGTTAAAGGATACCATTGATTCGAGAAAGAATAGATGGCAACAAAAGAGCAGTCCTGTTCTTGACATTTTATTGGCCCTAGGCTAa 1425 0.3951 MGSTKVMAFELNGVQIKTTVTNEVKVIDEHISSFLHRTDNQRTKVIGFDIEWRPPSMLEPVIFQLCDGNSCLVFHLHPKNPVPLSLRNFLRQPNYTFVGCGIKDDFDYLKKHCGTGCKNAVELGTLAATLMDKPHLRFCGVDELAFVVNKLDFHKYRPLNLAFNWGDFPVSEKLAKLATVNAYSYHKIGSALFERIFFQQRGLIPSPSSQSPLQTMHKAEKKYEVGKVTDEEQTKQRQLKGILNNLTPQNFEKLFEQVKAVNIDNAVTLTGVVSQIFEKALMEPTFCEMYVNFCLHLAAVLPDFSQDNEKITFKRLLLNKCQEEFERGEREQEEANKADEGEVKQSDEEREAKRSKARRRRLGNIRLIGELYKKKMLTERIMHECIKKLLGQCQNPDEEAIEALCILMSTIGEMIDHPKTKEHMDVYFERIKLLSNNMNLSYRVRFMLKDTIDSRKNRWQQKSSPVLDILLALG 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00837 474 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4G 206 462 - -
Tsu04g00837 474 Gene3D - 227 460 - -
Tsu04g00837 474 SUPERFAMILY ARM repeat 230 460 IPR016024 -
Tsu04g00837 474 MobiDBLite consensus disorder prediction 328 357 - -
Tsu04g00837 474 Pfam 3'-5' exonuclease 42 154 IPR002562 GO:0003676|GO:0006139|GO:0008408
Tsu04g00837 474 SUPERFAMILY Ribonuclease H-like 36 192 IPR012337 -
Tsu04g00837 474 Pfam MIF4G domain 236 457 IPR003890 GO:0003723|GO:0005515
Tsu04g00837 474 MobiDBLite consensus disorder prediction 328 355 - -
Tsu04g00837 474 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 206 462 IPR045208 GO:0003743
Tsu04g00837 474 SMART if4_15 236 458 IPR003890 GO:0003723|GO:0005515
Tsu04g00837 474 Coils Coil 318 338 - -
Tsu04g00837 474 Gene3D - 2 192 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00837 Tsu-Chr4 8016150 8018888 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00837 198 462 Eukaryotic Initiation Factors Gene Family AT3G60240 71.429 3.58e-112 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00837 K03260 - gmx:100796636 427.172