Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00834 ATGGCGAAAAGTGGTGAAGGATGTGCCATTGGAATAGACCTTGGGACGACGTACTCATGTGTTGCTGTGTGGCAAGAAGAACATAGTAGAGTTGAGATTATTCACAATGATCAAGGCAACAAAACTACTCCTTCTTTTGTTGCTTTCActgaagatgaaagattgaTCGGTGATGCTGCGAAGAATCAGGCAGCCACAAACCCAGAAAACACTGTATTTGATGCTAAGAGGCTAATTGGTAGGAAGTTTAGTGATCTCGAGGTCCAAAAAGATAAAACGTTGTGGCCATTCAAGGTCATTGCCGGTGAGAATGACAAACCAATGATTTCCCTTAAATATAAGGGACAAGAGAAGAGTTTCTGTGCGGAGGAAGTATCATCTATGGTGCTCACAAAGATGCGGAATATTGCAGAGGCATATTTGGAATCACCAGTTAAGAATGCAGTCATTACTGTGCCTGCTTATTTCAATGATTCTCAGCGAAAATCCACCATAGATGCCGGTCTTATTGCTGGCCTTAATGTTTTGAAGATAATGAATGAACCAACTGCTGCAGCTATCGCATATGGTCTTGACAAAAGAATTAACTGTGTGGgtgaaagaaatatttttgtctttgaCCTTGGTGGCGGGACTTTTGATGTGTCTCTTCTTACAATTAAGGACAAGGTCTTCCAAGTTAAGGCCACTTGTGGAAACACTCACCTTGGGGGAGAGGACTTTGATAATAGAATGGTGAATTACTTCGCAGAGGAgatgaaaaggaagaaaaaattggatattACTAGGAGCCCAAAAGCTTTGAGGAGGTTGAGAAGTGCGTGTGAGAAGGCGAAAAGGACACTGTCTTTTGCTGTTGCCACTAATGTTGAGGTAGATTCTTTATTTCAGGGTGTTGATTTTTCTTCATCAATCACTCGTGCCAAGTTTGAGGAAATCAATATGGACCTTTTTGATGAGTGCATGTCGATTGTTGAGAGGTGTCTTACTGATGCTAAGATGGACAAGATCAGGGTTGATGATGTTGTTCTTGTGGGTGGCTCATCTAGGATTCCTAAAGTACATCAACTATTGAAGGACTTCTTCGAGGGCAAGGAATTGTGCAACAGCATCAACCCTGACGAGGCTGTTGCGTATGGTGCAGCTGTCCAGGCTGCTTTGTTGAGTAAAGATAGTAAGAATGTTCCAAACTTGGTGCTGATCGATATCGCACCGCTGTCTCTAGGTTGGAAGCTAATAAATGATGTCATGAGTGTGATGATTCCTAGGAACACTCCCATTCCTGTCAAGAAGACAAGACAATATATTACTGTTAAAGATAATCAAACACATGTTGGTATTGAAGTCTATGAGGGTGAGAGAGCAAGAGCAAGTGACAATCATCGTCTTGGTTATTTCATTCTTTCTGGCTTACCCCCTGCTTCCGCTCGTGGCCATCTTTACGATGTAAGTTTTGATGTCGATCAAAATGGTATTTTAACAGTTTCTGCTATCGATAAATCTACTGGCAGCACAAACAAGATTACAATAACCAATGAAAAAGGAAGGTTGTCGACCGAAGAAATTAACAGATTGATTCAAGAAGCTGAGACTTACTGTATCGATGATAAGAAATTCTTAAGAAAGGCGGAAATAATGAATGCACTGGACCTGTGTGTTTACAAAATGAGAAATGCGTTGAAAAAGAAGGATATTAATCTAAAGCTCTCTTCAgaagaaaacaagaagatcaATAATGCAATTACAAAAGCCGCAAATTTACTTGATGAGAATGACCGTCGGAATGAAATTGATGTGTTTCAGAATCACCTGAATGAGCTTGAGAGTATGTATAAGTGCATTATAGGCAAGTCCGGCTAG 1860 0.3914 MAKSGEGCAIGIDLGTTYSCVAVWQEEHSRVEIIHNDQGNKTTPSFVAFTEDERLIGDAAKNQAATNPENTVFDAKRLIGRKFSDLEVQKDKTLWPFKVIAGENDKPMISLKYKGQEKSFCAEEVSSMVLTKMRNIAEAYLESPVKNAVITVPAYFNDSQRKSTIDAGLIAGLNVLKIMNEPTAAAIAYGLDKRINCVGERNIFVFDLGGGTFDVSLLTIKDKVFQVKATCGNTHLGGEDFDNRMVNYFAEEMKRKKKLDITRSPKALRRLRSACEKAKRTLSFAVATNVEVDSLFQGVDFSSSITRAKFEEINMDLFDECMSIVERCLTDAKMDKIRVDDVVLVGGSSRIPKVHQLLKDFFEGKELCNSINPDEAVAYGAAVQAALLSKDSKNVPNLVLIDIAPLSLGWKLINDVMSVMIPRNTPIPVKKTRQYITVKDNQTHVGIEVYEGERARASDNHRLGYFILSGLPPASARGHLYDVSFDVDQNGILTVSAIDKSTGSTNKITITNEKGRLSTEEINRLIQEAETYCIDDKKFLRKAEIMNALDLCVYKMRNALKKKDINLKLSSEENKKINNAITKAANLLDENDRRNEIDVFQNHLNELESMYKCIIGKSG 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00834 619 PRINTS 70kDa heat shock protein signature 8 21 - -
Tsu04g00834 619 PRINTS 70kDa heat shock protein signature 339 355 - -
Tsu04g00834 619 PRINTS 70kDa heat shock protein signature 211 221 - -
Tsu04g00834 619 PRINTS 70kDa heat shock protein signature 397 416 - -
Tsu04g00834 619 PRINTS 70kDa heat shock protein signature 60 68 - -
Tsu04g00834 619 PRINTS 70kDa heat shock protein signature 148 168 - -
Tsu04g00834 619 PRINTS 70kDa heat shock protein signature 478 494 - -
Tsu04g00834 619 PRINTS 70kDa heat shock protein signature 38 50 - -
Tsu04g00834 619 PRINTS 70kDa heat shock protein signature 371 391 - -
Tsu04g00834 619 Gene3D - 10 386 - -
Tsu04g00834 619 ProSitePatterns Heat shock hsp70 proteins family signature 2. 205 218 IPR018181 -
Tsu04g00834 619 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Tsu04g00834 619 SUPERFAMILY Actin-like ATPase domain 8 193 IPR043129 -
Tsu04g00834 619 SUPERFAMILY Actin-like ATPase domain 200 389 IPR043129 -
Tsu04g00834 619 Gene3D - 547 618 IPR029048 -
Tsu04g00834 619 Gene3D - 194 368 - -
Tsu04g00834 619 ProSitePatterns Heat shock hsp70 proteins family signature 3. 342 356 IPR018181 -
Tsu04g00834 619 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 392 546 IPR029047 -
Tsu04g00834 619 Pfam Hsp70 protein 9 613 IPR013126 GO:0005524|GO:0140662
Tsu04g00834 619 Gene3D Actin; Chain A, domain 4 237 320 - -
Tsu04g00834 619 PANTHER HEAT SHOCK 70 KDA PROTEIN 4 617 - -
Tsu04g00834 619 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 394 550 IPR029047 -
Tsu04g00834 619 PANTHER HEAT SHOCK PROTEIN 70KDA 4 617 IPR013126 GO:0005524|GO:0140662
Tsu04g00834 619 Gene3D - 73 128 - -
Tsu04g00834 619 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 544 617 IPR029048 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00834 Tsu-Chr4 7990179 7992155 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00834 1 617 Calmodulin-binding Proteins AT3G12580 64.401 0.0 812
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00834 K03283 - gmx:102667578 897.501