Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00833 atgCAACTTCATAATCTTTGTATTGTTTTACCACAAAATTCAGGTGAACTAATGAACCAACAAGAACAACCTCAAAAAagtttcaaacaaaaatcttttaaatcttcaaagaaacaaaaatttaagtCCAAAAGTCCTTCTTCAAGAACTTGTGGTGGAGGACAACAAGTTCTTGATTTGCTTCATGATTCATTAAGCAAGTTATGTAACTCAAAATGGTTGGTGGGTGCAAAAAGAATTTGTAAAAATGGAGGggtgcaaaaagaaaaacagaaaaactcATCAACTAGTACTATTTTTCATGACATGGATGGTGTACAATTTGGTGTTAAGATTGGAAGAGATAATCCAAGAATTTTCAGCTATGCAGAACTTTTCATAGGTTCTAATGGTTTCAATGAAGAACAAGTTTTAGGAAGTGGAGGATTTGGAAAAGTTTACAAAGCACTTTTACCAAGTGATGGAACTTTAGTAGCTGTGAAATGTTGTTTATCAGAAAAAGGTAAACAATTTGACAAAAGTTTCTTAGCCGAATTATCGGCTGTAGCCGATCTTCGACATAAGAATCTTGTTAGGTTAAGAGGTTGGTGTGTTCATGAAGATCAATTACATCTTGTTTATGATTACATGCCGAATCGAAGCCTTGACCGAGTACTTTTTCGACGGTCGGAGAATATGAAAGGTGAGCAGCCTCTTGGTTGGagacaaagagaaaaaattgttaaaGGTTTGTCTGCTGCATTGTATTATTTACATGAACAATTAGAGACTCAAATTATTCATAGAGATGTTAAAACAAGTAATGTTATGCTTGATTCTCATTATAATGCTAAGTTAGGTGATTTTGGTATGGCAAGATGGCTAGAACATGAACTTGAGTATGAGTTTAAGTTTAAGTATAATTCTAGCAATAAGAAAACTTCAAGTAGAATTGATCATTTCAAGTTAGGGGAAACATCAAGAATTGGTGGAACAATTGGTTATCTTCCACCAGAAAGTTTACAAAAACTAAGCAATGGTACATCAAAATGTGATGTGTTTAGTTTTGGTATTGTTGTGCTTGAAATTGTATcaggaagaagagcaattgatTTAGCTTATTCTGATGATAAAATCATTTTGCTTGATTGGATTAGAAGGCTTTGTGATGAAGGGAAGCTTATAGAAGCAGCTGATATAAGGTTTCAAAAAGATGGATCATATAATTTTTCTGAGATGAAGCATTTTATTCATATTGGTCTTCTTTGTACACTTCATGATCCAAATTTAAGGCCTAATATGAAATGGATTGTGGAAGCACTTTCTGATTTAAGTTTTAAACTTCCTTCACTTCCTTCATTTCTATCACATCCTCTTTATATCTCTTTGTCTTCACCAAGTGAAACTACTACTAGTCCTAGTAGTACTAGTGGCACGATTTCGGTCTCGGAAAATGTTAGCTTGATCACAAACTATAGTTCATCAAACTATGTTACAGCTGCTGGTGAAACAGTTTATGTAACTgctgaaaacaaaaatagtggAATCAGTTCTTCTGATAagcctcatcatcatcatcacaacaGGCAACGATTTCCGGTGGTTGAAACTCCGAGAGAAATTTCATACAAAGAGATTGTTTGTGCTACAAATAACTTCTCAGAGTCAAGAAGGGTAGCTGAACTTGATTTTGGAACTGCTTATCATGGAGTTCTTGATGATAATTGTCATGTTTTGGTGAAAAGGTTGGGAATGAAGACGTGTCCTGCGTTGCGCGATAGATTCTCGAACGAACTCAGAAATCTTGGAAAGCTTCGGCATAGGAATTTGGTTCAGCTTCGCGGATGGTGTACCGAACATGGAGAGATGCTCGTGGTTTACGATTATTCGGCTAGTAGAATTCTCAGTCAACAACTTCTACAAATTCATAACAAAGGCAAATCTTCGGTACTCGAATGGCATCATAGGTACACCATAGTGAAATCACTAGCTTCTGCTGTTCTTTATCTACATGAAGAATGGGATGAACAAGTGATTCACAGAAACATTACCTCATCAGCTGTTATTCTTGAACAAGATATGAATCCAAGACTTAGTAGTTTTGCTCTAGCTGAATTCTTGTCAAGGAATGAGCATGGCCATCATGTAGCCGACGATGCTAACAAATCAGTTCGAGGGATTTTCGGTTACATGTCACCGGAATATGTTGAAACTGGCGAAGCAACTTCAGCGGCTGATGTTTATAGTTTCGGCGTGGTGGTGCTTGAAGTTGTTAGTGGACAAATGGCAGTGGATTTTAGGTACCAAGAGGTTCTTCTGGTGAAGAAAGTTCATGAATTTGTGATGAGAAAAAGACCATTGAAGGAATTAGCTGATATAAGACTTAATGGAGAGTATAATGAAGAAGAATTGATGAGATTGGTAAGATTAGGAATTGCATGCACTAGTGGTGATCCTAAATTGAGACCAAGTATGAGACAAATTGTGAGCATTCTTGATGGAAATGACAAATTACTCAACATGATAAAGAAGGAAAGTAGAGAAGAATGGAGAGAAACAAATTATAGTTCTTTGTCTATGATTAGGAGAATTCAAGCTTTAGGAATACAGTAA 2592 0.3391 MQLHNLCIVLPQNSGELMNQQEQPQKSFKQKSFKSSKKQKFKSKSPSSRTCGGGQQVLDLLHDSLSKLCNSKWLVGAKRICKNGGVQKEKQKNSSTSTIFHDMDGVQFGVKIGRDNPRIFSYAELFIGSNGFNEEQVLGSGGFGKVYKALLPSDGTLVAVKCCLSEKGKQFDKSFLAELSAVADLRHKNLVRLRGWCVHEDQLHLVYDYMPNRSLDRVLFRRSENMKGEQPLGWRQREKIVKGLSAALYYLHEQLETQIIHRDVKTSNVMLDSHYNAKLGDFGMARWLEHELEYEFKFKYNSSNKKTSSRIDHFKLGETSRIGGTIGYLPPESLQKLSNGTSKCDVFSFGIVVLEIVSGRRAIDLAYSDDKIILLDWIRRLCDEGKLIEAADIRFQKDGSYNFSEMKHFIHIGLLCTLHDPNLRPNMKWIVEALSDLSFKLPSLPSFLSHPLYISLSSPSETTTSPSSTSGTISVSENVSLITNYSSSNYVTAAGETVYVTAENKNSGISSSDKPHHHHHNRQRFPVVETPREISYKEIVCATNNFSESRRVAELDFGTAYHGVLDDNCHVLVKRLGMKTCPALRDRFSNELRNLGKLRHRNLVQLRGWCTEHGEMLVVYDYSASRILSQQLLQIHNKGKSSVLEWHHRYTIVKSLASAVLYLHEEWDEQVIHRNITSSAVILEQDMNPRLSSFALAEFLSRNEHGHHVADDANKSVRGIFGYMSPEYVETGEATSAADVYSFGVVVLEVVSGQMAVDFRYQEVLLVKKVHEFVMRKRPLKELADIRLNGEYNEEELMRLVRLGIACTSGDPKLRPSMRQIVSILDGNDKLLNMIKKESREEWRETNYSSLSMIRRIQALGIQ 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00833 863 PANTHER - 1 862 - -
Tsu04g00833 863 Gene3D Phosphorylase Kinase; domain 1 106 209 - -
Tsu04g00833 863 Gene3D Transferase(Phosphotransferase) domain 1 210 440 - -
Tsu04g00833 863 SUPERFAMILY Protein kinase-like (PK-like) 116 469 IPR011009 -
Tsu04g00833 863 ProSitePatterns Protein kinases ATP-binding region signature. 138 161 IPR017441 GO:0005524
Tsu04g00833 863 MobiDBLite consensus disorder prediction 25 50 - -
Tsu04g00833 863 Pfam Protein kinase domain 132 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00833 863 PANTHER RECEPTOR LIKE PROTEIN KINASE S.2 1 862 - -
Tsu04g00833 863 CDD STKc_IRAK 557 827 - -
Tsu04g00833 863 ProSiteProfiles Protein kinase domain profile. 546 832 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00833 863 ProSiteProfiles Protein kinase domain profile. 132 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00833 863 SUPERFAMILY Protein kinase-like (PK-like) 522 825 IPR011009 -
Tsu04g00833 863 ProSitePatterns Serine/Threonine protein kinases active-site signature. 259 271 IPR008271 GO:0004672|GO:0006468
Tsu04g00833 863 Gene3D Phosphorylase Kinase; domain 1 507 622 - -
Tsu04g00833 863 Pfam Protein tyrosine and serine/threonine kinase 551 825 IPR001245 GO:0004672|GO:0006468
Tsu04g00833 863 Gene3D Transferase(Phosphotransferase) domain 1 629 850 - -
Tsu04g00833 863 SMART serkin_6 132 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00833 Tsu-Chr4 7985474 7988153 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00833 532 826 Receptor kinase-like Gene Family AT5G55830 36.577 2.22e-51 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Tsu04g00833 PK_Tyr_Ser-Thr 1e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00833 - - gmx:100796108 1241.48